PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G068100.1
Common NamePOPTR_0015s07930g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 275aa    MW: 30158.3 Da    PI: 6.0559
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G068100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.3e-10155202455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i ++++ L++l+P +    +k   Ka +L + ++YI+sLq
  Potri.015G068100.1 155 SHSLAERARREKISERMNMLQDLVPGC----NKVIGKALVLDEIINYIQSLQ 202
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.29E-9149206No hitNo description
SuperFamilySSF474591.57E-17149220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18151220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.643151201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-8155202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-10157207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MDPPLINETS FSAANPSSYT LTEIWPFPPP PPSSTRLGLR MDNLADPDGS LEESTLTDQS  60
SGNGTRIRKT RDFSSEKDDS SKMVSTTTSA NDLNDSNGKR RKISGSRSEN NDSRAETEAS  120
SAANNKTAEQ SSKPSEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MNMLQDLVPG  180
CNKVIGKALV LDEIINYIQS LQCQVEFLSM KLEAVNSRMN TSPTTEHLHP KDLGAQPFVA  240
TGMISGPQPT REYVQGSQSE WLHMQVGGSF ERAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.189330.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G068100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321546.20.0transcription factor bHLH79 isoform X1
SwissprotQ9LV174e-90BH079_ARATH; Transcription factor bHLH79
TrEMBLB9IEI70.0B9IEI7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07930.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.14e-89bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]