PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G067700.1
Common NamePOPTR_0015s07900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 386aa    MW: 42851.3 Da    PI: 5.6541
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G067700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.5e-171461148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg WT++Ed +++  v+++G+g+W++++++ g+ R++k+c++rw +yl
  Potri.015G067700.1 14 RGLWTADEDAKILAHVAKHGTGNWTAVPKKAGLQRCGKSCRLRWTNYL 61
                        788*******************************************97 PP
2Myb_DNA-binding38.23.2e-1268109245
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                         +++T++E+e ++++++  G++ W+ Ia+ ++ gRt++++k+ w+
  Potri.015G067700.1  68 DNFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNCWN 109
                         68*******************.*********.*********887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.868965IPR017930Myb domain
SuperFamilySSF466891.2E-2911108IPR009057Homeodomain-like
SMARTSM007175.1E-131363IPR001005SANT/Myb domain
PfamPF002491.4E-151461IPR001005SANT/Myb domain
CDDcd001671.12E-111761No hitNo description
Gene3DG3DSA:1.10.10.604.6E-2365116IPR009057Homeodomain-like
SMARTSM007171.7E-1266114IPR001005SANT/Myb domain
PROSITE profilePS5129416.1166116IPR017930Myb domain
CDDcd001676.11E-969109No hitNo description
PfamPF002495.8E-1169109IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MVRPPCCGKF NVKRGLWTAD EDAKILAHVA KHGTGNWTAV PKKAGLQRCG KSCRLRWTNY  60
LSPDLKHDNF TPQEEEMIIR LHAAIGSRWS IIAQQLPGRT DNDVKNCWNA RLRKKLSEMG  120
IDPVTHKPFS KILADYGNIG GLVKSGSRIG SLSRDLKNVF ALKPEQYNSI LPEGISNINS  180
HLMTRMVPRK MEPVQECFLN KFNNDSTNSN HSLDLLDQLQ AIKLVTEASS TCAEYQTMLV  240
PNYNILDEGS LSSSTCSTET QENLPTSFRW CDFLLEDQFL PSDPQAEQEN AAELSSKDLT  300
NQTQNVIVTS QGQNPNTMKP QCDQIIAEAS VGVNGVDLAV QNNSGFGDQV APSSSQHSSF  360
VETIIDGENK IFLDFPNLLE ELFNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G067700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321544.10.0transcription factor MYB35
TrEMBLB9IEI50.0B9IEI5_POPTR; Uncharacterized protein
STRINGPOPTR_0015s07900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-71MYB family protein