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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G064100.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 629aa MW: 67529.2 Da PI: 6.6448 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3.1e-30 | 271 | 330 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+aed +++++tYeg+Hnh+ Potri.015G064100.1 271 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCAEDMSILTTTYEGTHNHP 330 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.4E-31 | 256 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.97E-27 | 264 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.875 | 266 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-36 | 271 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.2E-26 | 272 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 629 aa Download sequence Send to blast |
MDAEDAMRRP RHEVVLKEDD RVDSSGDEGS CREEAAAAAA AVGSQRGCQE NDDRRSSSPQ 60 HRDSGKQVIV ATKNERITTE ADAKESSCQK EQDDQLESAR AEMGEVRKEN QRLKIHLDRV 120 VKDYRTLQVQ FYEIIQQEET KKSTDTVDDH QGTEEHELVS LTLGRISSEP KRDGKNNKTS 180 SQGKNHDEQV KESLSLGSLC TFEASKSATN ETLPNPSPVN SFGEPKEEAG ETWPPSKALK 240 TMRGGDDEVP QQNPAKKARV SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA 300 PSCPVRKQVQ RCAEDMSILT TTYEGTHNHP LPISATAMAS TTSAAASMLL SGSSSSSAGT 360 AGFNNSGTIA VDLHGLNYYL SDNSKSKQFY LHNSSLSSSS PYPTITLDLT SNPSSASSHF 420 NRFTTSSYRP TIQKFASTSL NFGSSDSSNA MPWGNGFLTA SGQSHNRINQ LGTLNIGRPA 480 MDQSNIYDQF YTQNINDLAA ATSQQSLSAD TIAAATKAIT ADPSFQSALA AALTSIIGTG 540 TGSSATGVAN LGVVNNLFPK SERGPVINSF SSSPPNGNPC ASYFNKTTSS INSQPAPSSM 600 TMFVPPSLPF STPTNASASA VDKNDRAN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-21 | 271 | 332 | 17 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-21 | 271 | 332 | 17 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G064100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441832.1 | 0.0 | probable WRKY transcription factor 72 | ||||
TrEMBL | A0A2K1XJ02 | 0.0 | A0A2K1XJ02_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s07530.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 6e-74 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G064100.1 |