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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.015G054600.1 |
Common Name | POPTR_0015s06480g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
CO-like |
Protein Properties |
Length: 426aa MW: 48250.1 Da PI: 4.7406 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.015G054600.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 28.8 | 2.6e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + +k++++fC ++ +lC+ C + H+ H++v
Potri.015G054600.1 16 ARACDSCLRKRARWFCVADDAFLCQACDASVHSAnqlasrHQRV 59
578*****************************667888888876 PP
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2 | CCT | 70.2 | 5.3e-24 | 373 | 416 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
Potri.015G054600.1 373 REARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 416
9*****************************************87 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 426 aa
Download sequence Send
to blast |
MISGRKAANA MGSKTARACD SCLRKRARWF CVADDAFLCQ ACDASVHSAN QLASRHQRVR 60 LETASSYRIS SSLNTDQDYS PPAWHQGFTR KARTPRHNSN KSLLVQQLLK DDREKVLNPL 120 PLVPEIGSEE EPNMAPDENE DDQLLCRVPV FDPFAAKMCD IVTSEDENMV VEVYGQEGAC 180 GLDNLPGFLP SDMDLAEFAA DVENLLGREA DEEYHDTKDL ELLDCSKGED EGQFCFADKV 240 VKMKDEQEME TIIDCHFDQD FNMARESLLG WNFDYETLVD GDEEVEEKKV PVPETEMMNS 300 TGYKEMKRNV SLRLDYESVI IAWANQGCPW TTGSRPELNP DDSWTDSMGA CPKDVNNPYG 360 GLGSHTRGGD GEREARVMRY KEKRRTRLFS KKIRYEVRKL NAEKRPRMKG RFVKRTSLMG 420 TTDFP*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 383 | 399 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC213017 | 0.0 | AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT1G25440.1 | 8e-89 | B-box type zinc finger protein with CCT domain |