PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G054500.1
Common NamePOPTR_0015s06470g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 322aa    MW: 36395.9 Da    PI: 4.4861
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G054500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2452.8e-14113156350
                 AP2   3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaar 50 
                         ykGVr+++ +g++ AeIrd +     + r +lg++ taeeAa+a+ + +
  Potri.015G054500.1 113 YKGVRRRP-WGKYSAEIRDpF----LKIRLWLGTYTTAEEAAAAYKKKK 156
                         9*******.**********44....25******************8766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.60E-12111140No hitNo description
SMARTSM003808.7E-15112178IPR001471AP2/ERF domain
PROSITE profilePS5103218.4112172IPR001471AP2/ERF domain
PfamPF008473.5E-7112153IPR001471AP2/ERF domain
SuperFamilySSF541715.36E-15112162IPR016177DNA-binding domain
PRINTSPR003672.7E-9113124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.6E-20113162IPR001471AP2/ERF domain
PRINTSPR003672.7E-9135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPGLQRPILD QDRIFDQEKQ KKPAMESNMK ASRKVRIICH DPEATDSSSD EDEEYFDRCN  60
RWKQFIREIT LPVFPSKSIL EGPSQDKTGV CKSNIIISNS LDNIRPRRSS AIYKGVRRRP  120
WGKYSAEIRD PFLKIRLWLG TYTTAEEAAA AYKKKKVEFD SKMALERANN LHVDTKVVSE  180
EFDGLCSHPS PLSVLDVSTM TSLGHGLESN VEMVAKECNM ESSIKEESCV EMIEDGSEEV  240
QCISDLWEER TLSPSVSQEL LGFDQQSEIG QFFDGFINGE GFSMRDNTEP VSSPMDGVMD  300
LPDIELETLA FVEETLNFAH Q*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12033KKPAMESNMKASRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G054500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130170.0AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374367.20.0ethylene-responsive transcription factor ERF073
TrEMBLA0A2K1XID20.0A0A2K1XID2_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF134512027
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-12ERF family protein