PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G048000.1
Common NamePOPTR_0015s03550g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 568aa    MW: 61793.6 Da    PI: 8.5875
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G048000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH47.43.5e-15263312255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         r +h++ E+rRR++iN++f+ Lr l+P+     ++K +Ka+ L +++e+++ Lq
  Potri.015G048000.1 263 RSKHSATEQRRRSKINDRFQMLRALIPHG----DQKRDKASFLLEVIEHVQFLQ 312
                         889*************************7....7******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.3E-24258335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.37E-18259332IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.891261311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-12263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-14263316No hitNo description
SMARTSM003532.7E-12267317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MELPQQRPFG TEGRKPTHDF LSLYSHSSTV QQDPRPPSQG GFLQTHDFLQ PLEQVSKATA  60
REETNVEILT IEKPPPPAPP PSVEHTLPGG IGTYSISHVS YFNQRVPKPE NTIFSVAQAS  120
STDKNDENSN CSSYSASGFT LWEESTLKKG KTGKENVGER SNIIREAAAK TDQWTTSERP  180
SQSSSNNHRN SFSSLSSSQP PGLKCTQSFI EMIKSAKGSN LDDDLDDEET FLLKKETPSP  240
IHKGELRVKV DGKSNDQKPN TPRSKHSATE QRRRSKINDR FQMLRALIPH GDQKRDKASF  300
LLEVIEHVQF LQEKVQKYEG SYQGWNHEHA KLGPWRNNSR PVESSVDQSR GVNSGVGPAL  360
LFAANLDEKS ITISPSINPG GARNAVESNM SSASTFNAMD HHPNLGITNK AMPFPISLQP  420
NLFHPGRIAG AAAQFPPRLA FDAENTATQP QPCHAISCTS DGAVASDKLK QQNLTVEGGT  480
ISISTAYSQG LLNTLTQALQ SSGVDLSQAT ISVQIELGKK GNSRQTAPTS IVKDNNVPPS  540
NQGTIRSRVS SGEESDQALK KLKTSKG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.128560.0bud| catkin| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G048000.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453750.0EF145375.1 Populus trichocarpa clone WS01123_N13 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322046.30.0transcription factor BIM1 isoform X1
SwissprotQ9LEZ31e-129BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2K1XI220.0A0A2K1XI22_POPTR; Uncharacterized protein
STRINGPOPTR_0015s03550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72523145
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.41e-127bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]