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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.015G023200.1 |
Common Name | POPTR_0015s06070g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 364aa MW: 40840.1 Da PI: 4.8863 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.015G023200.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 64.1 | 3e-20 | 129 | 178 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
+++GVr+++ +g+W+AeIrdp r +r +lg+++taeeAa+ +++a+ kl+g
Potri.015G023200.1 129 KFRGVRQRP-WGKWAAEIRDPA----RrQRLWLGTYDTAEEAARVYDNAAIKLRG 178
89*******.**********82....35*************************99 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042991 | Biological Process | transcription factor import into nucleus |
GO:0048366 | Biological Process | leaf development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MIDQSILCPI KYTEHKKVTK QFTKPSLKPK KLPSDDRCRL LEPSNPQPRL VRVTVTDHDA 60 TDSSSDEEGG LFGRQRVKRY VNEINIQASC KETNAITTAV ANNRKRGVGD IPQRPAKKSA 120 PQSTNNGRKF RGVRQRPWGK WAAEIRDPAR RQRLWLGTYD TAEEAARVYD NAAIKLRGPD 180 ALTNFITPPS REEEQEQEKS TVEEREGEEK KKPEINVDTV SGSGYESADE SHSLSSPKSV 240 LTFRLPSAES HKPPAHPFHE VEKEPSYQDN QEAFGESNST DYLPLDAPFL DDFFNFGTSG 300 PTLFDDQVMA TATTSVFEES FMSNQDFGDI FLDPLQDFSS LSSVCQEDDD FFHFLNSEPL 360 AAL*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC196813 | 0.0 | AC196813.1 Populus trichocarpa clone Pop1-114I2, complete sequence. |