PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G017000.1
Common NamePOPTR_0015s01900g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 127aa    MW: 14358 Da    PI: 11.4651
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G017000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.5e-15587283
                        EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEE CS
                  B3  2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFk 83
                         k+l    + +++rl++p +f+++      g      +t   +de+g+ W +++++rk++    vltkGW  Fvk+++L++gD v F 
  Potri.015G017000.1  5 SKIL--RETDTKKRLSVPIRFLRSLppfklG---SHAVTFEATDEKGEAWPFQCSIRKRGHPkPVLTKGWVAFVKSKKLQVGDKVRFI 87
                        5666..55667778*********99998532...2457888999**********8855554469*********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.8412104IPR003340B3 DNA binding domain
SuperFamilySSF1019361.94E-154100IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.3E-19493IPR015300DNA-binding pseudobarrel domain
CDDcd100179.35E-19486No hitNo description
SMARTSM010191.6E-84104IPR003340B3 DNA binding domain
PfamPF023627.5E-13688IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MAAFSKILRE TDTKKRLSVP IRFLRSLPPF KLGSHAVTFE ATDEKGEAWP FQCSIRKRGH  60
PKPVLTKGWV AFVKSKKLQV GDKVRFIKRK NRATAAISYI VRAEKAIKIF GVTFGYARID  120
LVHFPN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G017000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134281e-151AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003895.15e-70PREDICTED: B3 domain-containing transcription factor NGA4-like
RefseqXP_011003897.13e-70PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLB9IDU92e-86B9IDU9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01900.14e-87(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34390.14e-10auxin response factor 22