PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.015G016200.1 | ||||||||
Common Name | POPTR_0015s01840g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 120aa MW: 13591 Da PI: 11.4651 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 54.1 | 2.8e-17 | 4 | 88 | 1 | 86 |
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldg 86 f+k+l + +++rl++p +f+++ +g+ +t +de+g+ W++++++rk+++ vlt+GW Fvk+++L +gD+v F + Potri.015G016200.1 4 FEKIL--RETDTKKRLSVPIRFLRSLppfKGS--HAVTFEATDEKGKAWTFQCSIRKTGQYpkPVLTRGWVAFVKSKKLHVGDTVRFI--K 88 77888..66667778**********9987555..56789999***********9999998899***********************98..2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.01 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.7E-19 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.9E-7 | 4 | 104 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.55E-15 | 4 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.1E-14 | 4 | 88 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.62E-19 | 4 | 86 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 120 aa Download sequence Send to blast |
MAEFEKILRE TDTKKRLSVP IRFLRSLPPF KGSHAVTFEA TDEKGKAWTF QCSIRKTGQY 60 PKPVLTRGWV AFVKSKKLHV GDTVRFIKRK NRATAAISYK VRAEKAIKIF GAPFGHARI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.015G016200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 0.0 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011003894.1 | 2e-69 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
Refseq | XP_011003895.1 | 6e-69 | PREDICTED: B3 domain-containing transcription factor NGA4-like | ||||
TrEMBL | A0A2K1XGK3 | 6e-81 | A0A2K1XGK3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01840.1 | 6e-80 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 1e-10 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.015G016200.1 |
Entrez Gene | 7475211 |