PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G176500.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | FAR1 | ||||||||
Protein Properties | Length: 215aa MW: 24735 Da PI: 8.4827 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 97.5 | 1.5e-30 | 58 | 146 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fY++YA++vGF +r+++ ++s r+g++++r++vC+keg+r+ + ++ +++r++ra+tr gCka+++vkkek gkw+vt++++eHnH+l+p Potri.014G176500.2 58 FYDAYATHVGFIMRVDAFRRSMRDGKVVWRRLVCNKEGFRKLRPRR-SENRKPRAVTREGCKAMIVVKKEKAGKWVVTRFVKEHNHPLVP 146 9*******************************************99.9***************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-29 | 58 | 146 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 215 aa Download sequence Send to blast |
MSQSQMDENA SASMSEDGDM DQIVESSNGK ELAISEASSD MEPCVGMEFE SEEAAKVFYD 60 AYATHVGFIM RVDAFRRSMR DGKVVWRRLV CNKEGFRKLR PRRSENRKPR AVTREGCKAM 120 IVVKKEKAGK WVVTRFVKEH NHPLVPTPAN GRRTDEKDVK IRELTAELQR ERKRSAAYQE 180 QLDMVLRDME EHSNHLSRNI DDIVQSVKEI ESRR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.629 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G176500.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441354.1 | 1e-155 | protein FAR1-RELATED SEQUENCE 2 | ||||
Swissprot | Q9SZL8 | 4e-30 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K1XXK1 | 1e-154 | A0A2K1XXK1_POPTR; FAR1 family protein | ||||
STRING | EMJ01654 | 1e-127 | (Prunus persica) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 3e-90 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G176500.2 |
Publications ? help Back to Top | |||
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