PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G167100.1
Common NamePOPTR_0014s16510g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 173aa    MW: 19744.5 Da    PI: 6.3495
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G167100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601223.1e-38141131100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaC++lrr+C ++C+lapyfp ++++kf  vhk+FGasnv+++++ ++e+++eda+++++yeA  r+rdPvyG++g+i++lq+ +e+lk
  Potri.014G167100.1  14 PCAACRMLRRRCDSNCMLAPYFPGDEAEKFFGVHKVFGASNVIRMIQMVDESKKEDAVKAIIYEATSRLRDPVYGSAGTIFHLQRMVEELK 104
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                          ++++++++
  Potri.014G167100.1 105 MQVESMRAQ 113
                         ***998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.240.103.2E-4528IPR001138Zn(2)-C6 fungal-type DNA-binding domain
PROSITE profilePS5089124.47213114IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-3814111IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSSQAQTRTR AHQPCAACRM LRRRCDSNCM LAPYFPGDEA EKFFGVHKVF GASNVIRMIQ  60
MVDESKKEDA VKAIIYEATS RLRDPVYGSA GTIFHLQRMV EELKMQVESM RAQVVQLQEQ  120
RNQLLGILMN VRHLDSTSSV HDSKFDGGNF MLDEDSMAYD PMTFFTENDW TF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3351162113LOB family transfactor Ramosa2.1
5ly0_B2e-3351162113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
UniprotTISSUE SPECIFICITY: Expressed in young shoots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G167100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321198.11e-129LOB domain-containing protein 1
SwissprotQ9LQR01e-42LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK082e-42LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB9IAT51e-127B9IAT5_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16510.11e-128(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF140681921
Representative plantOGRP1325945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-45LOB domain-containing protein 1