PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G166400.1
Common NamePOPTR_0014s16440g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SAP
Protein Properties Length: 460aa    MW: 50458.3 Da    PI: 6.6441
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G166400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP753.31.8e-22954592455
                 SAP   2 ssssssssseseegseggeggdassgesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanvfqvcstwravsrsdll 92 
                         sssssssss +++gs gg+ g + +ge+egps+sr+ra+nevwpePfleala+qvaidasr +Grl aa+alanvfqvcstwravsrsd l
  Potri.014G166400.1   5 SSSSSSSSSGNGNGSGGGNYGARRAGEYEGPSRSRPRAINEVWPEPFLEALAAQVAIDASRLVGRLVAAQALANVFQVCSTWRAVSRSDPL 95 
                         3444444555556666666666667****************************************************************** PP

                 SAP  93 wqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsdkylaaGfadGavrlfdletrlhv 183
                         w+rltr iW rt+l++dtWreeyiyrh+ta+nfr++r  ++ l+fdpadvd++nd+dal+Crcla+sd+yla+GfadGavrlfdl+trlh+
  Potri.014G166400.1  96 WHRLTRGIWGRTNLFHDTWREEYIYRHQTAQNFRSGRAVHFALHFDPADVDDPNDPDALICRCLAFSDRYLACGFADGAVRLFDLTTRLHA 186
                         ******************************************************************************************* PP

                 SAP 184 stflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvndGalvdfaGsgrWwvGlyaGvpGrafhiWda 274
                         +tf+p+h+drlGrfsravsGivi+ +rlvfatldGdihva++++  +a++rra lG+v+ndGalvdf+G+grWwvGlyaG pGra+++Wd+
  Potri.014G166400.1 187 RTFRPEHHDRLGRFSRAVSGIVITATRLVFATLDGDIHVAAVNS--NANPRRARLGEVLNDGALVDFTGRGRWWVGLYAGLPGRAYRVWDG 275
                         ********************************************..88******************************************* PP

                 SAP 275 eteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfdlrnqgvvlreeeer..rGlivssldasneayvvvdsr 363
                         +tee  f GG+ltdPeav GWh+lte+te+vGrvrvt++e++vaCts+rlv+fdl + g vlree+ +  rG++v+s+d+ neayv+vd r
  Potri.014G166400.1 276 NTEEPLFEGGALTDPEAVLGWHTLTEVTEFVGRVRVTSQESVVACTSSRLVIFDLGDLGAVLREEDYTnrRGILVGSFDVCNEAYVIVDGR 366
                         ***************************************************************9987666********************* PP

                 SAP 364 GvatvrrvenleevcrfrvrgaqrgvlgCvnggyalvyaggvlrvWeiekkeg..ylyslrervgevnalvaddrhvavsssdgtihlldf 452
                         G+a+vrr+++ ee+c f+vr   rgvlgC+nggy+l++aggv+rvW+ie+ +   ylys+rer+gevnalvad+rhva++ssd++ihl+df
  Potri.014G166400.1 367 GNASVRRADTSEEMCGFTVR-PPRGVLGCMNGGYVLTCAGGVVRVWQIEQPGRqeYLYSFRERIGEVNALVADERHVAAASSDTNIHLWDF 456
                         ********************.77***************************87667************************************ PP

                 SAP 453 gaq 455
                         gaq
  Potri.014G166400.1 457 GAQ 459
                         *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF813837.36E-873123IPR001810F-box domain
Gene3DG3DSA:1.20.1280.501.2E-773161No hitNo description
SuperFamilySSF509783.3E-15148230IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.2E-14162235IPR015943WD40/YVTN repeat-like-containing domain
Gene3DG3DSA:2.130.10.102.2E-14295359IPR015943WD40/YVTN repeat-like-containing domain
SuperFamilySSF509783.3E-15298331IPR017986WD40-repeat-containing domain
SuperFamilySSF509783.3E-15367456IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.102.2E-14396456IPR015943WD40/YVTN repeat-like-containing domain
PROSITE patternPS006780442456IPR019775WD40 repeat, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009908Biological Processflower development
GO:0030163Biological Processprotein catabolic process
GO:0046622Biological Processpositive regulation of organ growth
GO:0005634Cellular Componentnucleus
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MSSSSSSSSS SSSGNGNGSG GGNYGARRAG EYEGPSRSRP RAINEVWPEP FLEALAAQVA  60
IDASRLVGRL VAAQALANVF QVCSTWRAVS RSDPLWHRLT RGIWGRTNLF HDTWREEYIY  120
RHQTAQNFRS GRAVHFALHF DPADVDDPND PDALICRCLA FSDRYLACGF ADGAVRLFDL  180
TTRLHARTFR PEHHDRLGRF SRAVSGIVIT ATRLVFATLD GDIHVAAVNS NANPRRARLG  240
EVLNDGALVD FTGRGRWWVG LYAGLPGRAY RVWDGNTEEP LFEGGALTDP EAVLGWHTLT  300
EVTEFVGRVR VTSQESVVAC TSSRLVIFDL GDLGAVLREE DYTNRRGILV GSFDVCNEAY  360
VIVDGRGNAS VRRADTSEEM CGFTVRPPRG VLGCMNGGYV LTCAGGVVRV WQIEQPGRQE  420
YLYSFRERIG EVNALVADER HVAAASSDTN IHLWDFGAQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in inflorescence and floral meristems, young floral organ primordia, and later in ovule primordia.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in the specification of floral identity. Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in the external flower organs in association with APETALA2 and other repressors. Is required to maintain floral meristem identity in concert with AGAMOUS. Interacts also with APETALA2 to ensure the normal development of ovule.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G166400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976960.0KC297696.1 Populus tomentosa SAP gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321195.10.0transcriptional regulator STERILE APETALA
SwissprotQ9FKH11e-178SAP_ARATH; Transcriptional regulator STERILE APETALA
TrEMBLA0A3N7G1S60.0A0A3N7G1S6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s16440.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF76873146
Representative plantOGRP9756912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-171SAP family protein
Publications ? help Back to Top
  1. Li N, et al.
    STERILE APETALA modulates the stability of a repressor protein complex to control organ size in Arabidopsis thaliana.
    PLoS Genet., 2018. 14(2): p. e1007218
    [PMID:29401459]