PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G148900.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 573aa    MW: 62308.3 Da    PI: 7.9531
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G148900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.6e-09379426455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Potri.014G148900.1 379 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 426
                         8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.58E-17373444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.96E-10373430No hitNo description
PROSITE profilePS5088815.663375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17375444IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.8E-6379426IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10381431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 573 aa     Download sequence    Send to blast
MERDKLFVSE GANTAATIWN SCSFGMEMQA NELSCGPEKL ANCFLNPNWD NSLDQSDPFE  60
SALSSIVSSP VASGANANAN AIPNAGVGGD SLMIRELIGR LGNICNSGDI SLQSFVNNNN  120
NSTNTSCYST PMNSPPKLNL SMMDSQMRGN LPIPGNSVVK HPGLAPFPAD FVERAARYSC  180
FGSNNPGGIN KQFGLNESEL INRLMPRVEP GKLSRVSSNN SMKVTVSQAN VQESNKSSPQ  240
DGSLNSEKKF SRQSRPTTSE NGDSREESSL SEQVPGGKLS MKSQNDANSR KRKSIPRGKA  300
KETPSSSPSA SDVKVAAEND ESKAKRSKSD ETNGSDKDTA KEKEEENGNQ KQNKNNSKPP  360
EPPKDYIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  420
YVQSLQRQVE FLSMKLSSVN PRMEINMETL LSKDIFQSRG SMPHSLYPLD ASTPVFPYGY  480
QSQQGLALQN GMPSNAETQF SMNPLNAALR RNPSMHLPHL DGFGDPAALQ LEFYSSGLSH  540
VGRRPSKCCA DGIWSESSGE LSRLSALNSH EN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1288293SRKRKS
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G148900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2328450.0CU232845.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441353.10.0transcription factor bHLH78 isoform X1
TrEMBLB9IAB60.0B9IAB6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s14650.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-69bHLH family protein