PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G117000.1
Common NamePOPTR_0014s11230g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 288aa    MW: 32696.4 Da    PI: 6.5062
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G117000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.4e-182269148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        +g+WT eEd ll+++++ +G g+W+t ar+ g++Rt+k+c++rw++yl
  Potri.014G117000.1 22 KGPWTVEEDSLLAHYITNHGEGQWNTAARCAGLKRTGKSCRLRWLNYL 69
                        79********************************************97 PP
2Myb_DNA-binding46.48.8e-1575118146
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                         rg+ T +E++l+++++  +G++ W++Ia+ ++ gRt++++k++w++
  Potri.014G117000.1  75 RGNITLQEQLLILQLHSHWGNR-WSKIAQQLP-GRTDNEIKNYWRT 118
                         7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.0991769IPR017930Myb domain
SuperFamilySSF466894.77E-2919116IPR009057Homeodomain-like
SMARTSM007174.0E-122171IPR001005SANT/Myb domain
PfamPF002499.9E-152269IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-212376IPR009057Homeodomain-like
CDDcd001671.64E-92469No hitNo description
PROSITE profilePS5129423.30970124IPR017930Myb domain
SMARTSM007173.9E-1374122IPR001005SANT/Myb domain
PfamPF002491.4E-1375118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-2177123IPR009057Homeodomain-like
CDDcd001671.03E-695118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MDARVRKHGL ASTEDQDMGT RKGPWTVEED SLLAHYITNH GEGQWNTAAR CAGLKRTGKS  60
CRLRWLNYLR PNVRRGNITL QEQLLILQLH SHWGNRWSKI AQQLPGRTDN EIKNYWRTRV  120
QKQAKQLKCD VNSKQFRDTM RYAWIPRLIE RIQAESESPV DQPIISTPTY HSSQIDIPVA  180
ASESGSDLIG PNFMPDISGS CTYSDSLDAQ VSSGSDLTNS QNPPCSHYMQ NGACSYPEND  240
SVSWDWDQHG VDMQGMEQGR YGLTGGGDTM ENLWSEENIW FLHHQLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-22221247108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G117000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320278.20.0transcription factor MYB108
TrEMBLB9I9F30.0B9I9F3_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87534125
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49620.18e-77myb domain protein 78