PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G114300.1
Common NamePOPTR_0014s10960g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family SBP
Protein Properties Length: 1005aa    MW: 111261 Da    PI: 6.5615
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G114300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.31.7e-41150227178
                         --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                 SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                         +Cqve+C +dls+ak+yhrrhkvCe+hska+++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Potri.014G114300.1 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKASKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227
                         6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.3E-33147212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.18148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036128.63E-39149230IPR004333Transcription factor, SBP-box
PfamPF031106.3E-30151224IPR004333Transcription factor, SBP-box
SuperFamilySSF484038.08E-7778890IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.207.2E-6781892IPR020683Ankyrin repeat-containing domain
CDDcd002041.01E-7781888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1005 aa     Download sequence    Send to blast
MEARFGGEAH HFYATPPSDM RTVGKRGLEW DLNDWKWDGD LFIASPLNPV PSTGISRQFS  60
SHGVGTGILA TGNSSNSSSS CSDEVNLGAE KGKRELEKRR RVVVIDDDNL NDRETGGLSL  120
KLGGERDAGN WEGSIGKKTK LVGSGLSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAS  180
KALVGNAMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDTV GNGSSMNDDQ  240
TSGYLLISLL RILSNMHSNR SDQTTDQDLL SHLLRSLASH DVEHRGGNIF GQLQEPRDLS  300
TSFGNSAVDS TLLSNGEGPS KPLKQHLTVP MSGMPQQVKH LHDANGANIQ TASSLKPSIP  360
NNFATYSEVR ESTAGQVKMN NFDLNDIYID SDDGIEDIER SPAPVNAMTS SLDCPSWVQQ  420
DSRQSSPPQT SGNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPF VLRSQILDWL  480
SHSPTDIESY IRPGCIILTI YLRQAEAAWA ELCCDLGSSL SRLLDVSDNT FWRTGWVYIR  540
VQNQIAFVYN GQVVVDISLP LRSNNYSKIL SVKPIAISAS EKAKFCIKGI NLSRPATRLL  600
CAVEGNYMVQ DNAQELMDDV GSFKGHDEVQ CVNLSCSIPT LTGRGFIEIE DHGFSSSFFP  660
FLVAEEDVCS EIRMLEGALE FTETDADFGE TEKMEAKNQA TDFVHEMGWL LHRSQLKSRL  720
GHLNPSMDLF PLRRFNWLME FSMDHEWCAV VRKLLNILHN GIVCTGDQLS LNEALSEMGL  780
LHRAVRRNSR SLVELLLRYV PDKFGSKDKA LDGGSHESIL FRPDVIGPAG LTPLHIAAGK  840
DGSEDVLDAL TEDPGMVGIV AWKNARDSTG FSPEDYARLR GHYSYIHLVQ KKSKRQVVGH  900
VVLDIPSNLS NSNIAINEKQ NEGLTSGFEI GHTELRPIQR NCKFCSQKVV YGTASRSQLY  960
RPAMFSMVAI AAVCVCVALL FKSCPEVLYV FRPFRWELLD YGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A8e-30144224684squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.117230.0bud| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G114300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2311720.0CU231172.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320264.20.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A385JIK00.0A0A385JIK0_POPTO; Squamosa promoter-binding protein-like 12
TrEMBLB9I9C70.0B9I9C7_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Representative plantOGRP25951432
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]