 |
Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.014G111200.1 |
Common Name | POPTR_0014s10680g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MYB |
Protein Properties |
Length: 465aa MW: 51732.4 Da PI: 8.1174 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G111200.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 54.3 | 3.1e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEde+l++ ++++G g+W+++++ g+ R++k+c++rw +yl
Potri.014G111200.1 14 KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYL 61
678*******************************************97 PP
|
2 | Myb_DNA-binding | 44.3 | 4.2e-14 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg ++++E+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w++
Potri.014G111200.1 67 RGTFSQQEENLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWNS 110
899*******************.*********.***********97 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 465 aa
Download sequence Send
to blast |
MGRHSCCYKQ KLRKGLWSPE EDEKLLRHIT KYGHGCWSSV PKQAGLQRCG KSCRLRWINY 60 LRPDLKRGTF SQQEENLIIE LHAVLGNRWS QIAAQLPGRT DNEIKNLWNS CLKKKLRQRG 120 IDPVTHKPLS EVENGEDKNP PASGTQDKAS AVSNTELNLL KADNSKSSGA NLQEKRSSPI 180 SPNGYQLERE STSGSKVMNG NGNNTNDHVN NNLMTPTSNK DFFLDRFTAS HHQGSTSNCQ 240 PSDFVGHFPL QQLNYASNAR LATNSIPSLW LSQTSKAFDM NSEFSSTAIP SILPPAVTSS 300 FHSTSMSYKP SITVSPDNPS LPSFTTNSCR LWETGTPRSN SNSNTVSNGS TELQSNSSFF 360 ENAIFSWGLG ECGSAEKEAQ NHLMGSQHED IKWPEYLQNP LLMAAALQNQ NQQSLYNEIK 420 SETQVVTENS SGMWPHNHQQ QQPLQNPDIC PRDIQRITAS YGYI*
|
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB970784 | 0.0 | AB970784.1 Populus nigra PniMYB055 mRNA for MYB transcriptional factor, complete cds. |