|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.014G107200.2 |
Common Name | POPTR_0014s10290g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
B3 |
Protein Properties |
Length: 329aa MW: 37203.7 Da PI: 9.5946 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G107200.2 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 99.4 | 2.2e-31 | 32 | 136 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86
f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++ g
Potri.014G107200.2 32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLYAGDIVSFQRGvG 122
89****************************66677899*************************************************6657 PP
S.SEE..EEEEE-S CS
B3 87 r.sefelvvkvfrk 99
+ + +l++ ++r+
Potri.014G107200.2 123 EtGKHRLFIDWRRR 136
77899999999987 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 329 aa
Download sequence Send
to blast |
MELSLGNNNE SESSSTDAGG GASESIEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL 60 DSSSNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLY AGDIVSFQRG 120 VGETGKHRLF IDWRRRPNAP DPTSFSHLEL QNQLHYPQSL RWGRLYSMPQ SNLPMQQPQL 180 QHLNYSIHPY QQHQHHNHQY HYHQPSNISY GNAAQYYLRP PASTLPIGAV HEQGGSHVPV 240 VIDSVPVVHG KTVGKRLRLF GVNMECPTQN DPSSSVTMIR HGTLDSLSPR LASSSLPPPF 300 QVREPTGAPM QAEFSKKGKA SLSFDLDL*
|
3D Structure ? help Back to Top |
|
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
5os9_A | 1e-66 | 27 | 139 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-66 | 27 | 139 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] - Lee BH, et al.
The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] - Lozano-Sotomayor P, et al.
Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] - Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] - Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] - Sato H, et al.
Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]
|