PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G107200.2
Common NamePOPTR_0014s10290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 329aa    MW: 37203.7 Da    PI: 9.5946
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G107200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B399.42.2e-3132136199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  g
  Potri.014G107200.2  32 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLYAGDIVSFQRGvG 122
                         89****************************66677899*************************************************6657 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Potri.014G107200.2 123 EtGKHRLFIDWRRR 136
                         77899999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-4223143IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-3029137IPR015300DNA-binding pseudobarrel domain
CDDcd100173.53E-2630131No hitNo description
PROSITE profilePS5086314.64932137IPR003340B3 DNA binding domain
SMARTSM010198.0E-2232137IPR003340B3 DNA binding domain
PfamPF023627.0E-2932136IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MELSLGNNNE SESSSTDAGG GASESIEREH MFDKVVTPSD VGKLNRLVIP KQHAERYFPL  60
DSSSNEKGLL LNFEDRNGKP WRFRYSYWNS SQSYVMTKGW SRFVKEKRLY AGDIVSFQRG  120
VGETGKHRLF IDWRRRPNAP DPTSFSHLEL QNQLHYPQSL RWGRLYSMPQ SNLPMQQPQL  180
QHLNYSIHPY QQHQHHNHQY HYHQPSNISY GNAAQYYLRP PASTLPIGAV HEQGGSHVPV  240
VIDSVPVVHG KTVGKRLRLF GVNMECPTQN DPSSSVTMIR HGTLDSLSPR LASSSLPPPF  300
QVREPTGAPM QAEFSKKGKA SLSFDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66271393116B3 domain-containing transcription factor NGA1
5os9_B1e-66271393116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G107200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375395.10.0B3 domain-containing transcription factor NGA1 isoform X2
RefseqXP_006375397.10.0B3 domain-containing transcription factor NGA1 isoform X1
RefseqXP_024440381.10.0B3 domain-containing transcription factor NGA1 isoform X1
SwissprotO827991e-91NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5FV560.0U5FV56_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10290.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-79B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]