PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G107200.1
Common NamePOPTR_0014s10290g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 406aa    MW: 46195.6 Da    PI: 8.2527
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G107200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B398.83.3e-31109213199
                         EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.S CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.g 86 
                         f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L +gD+v F++  g
  Potri.014G107200.1 109 FDKVVTPSDVGKLNRLVIPKQHAERYfpldSSSNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKRLYAGDIVSFQRGvG 199
                         89****************************66677899*************************************************6657 PP

                         S.SEE..EEEEE-S CS
                  B3  87 r.sefelvvkvfrk 99 
                         +  + +l++ ++r+
  Potri.014G107200.1 200 EtGKHRLFIDWRRR 213
                         77889999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-42100220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-30106214IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-25107208No hitNo description
PROSITE profilePS5086314.649109214IPR003340B3 DNA binding domain
PfamPF023621.1E-28109213IPR003340B3 DNA binding domain
SMARTSM010198.0E-22109214IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MNFVGGERGY FDKEEQEEEE AMSSKLPFAS PCTSSSSSKY KNFLPEHQNL WPRLFDQPRQ  60
DSETQEPSLN FVKKLEFMEL SLGNNNESES SSTDAGGGAS ESIEREHMFD KVVTPSDVGK  120
LNRLVIPKQH AERYFPLDSS SNEKGLLLNF EDRNGKPWRF RYSYWNSSQS YVMTKGWSRF  180
VKEKRLYAGD IVSFQRGVGE TGKHRLFIDW RRRPNAPDPT SFSHLELQNQ LHYPQSLRWG  240
RLYSMPQSNL PMQQPQLQHL NYSIHPYQQH QHHNHQYHYH QPSNISYGNA AQYYLRPPAS  300
TLPIGAVHEQ GGSHVPVVID SVPVVHGKTV GKRLRLFGVN MECPTQNDPS SSVTMIRHGT  360
LDSLSPRLAS SSLPPPFQVR EPTGAPMQAE FSKKGKASLS FDLDL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-651042163116B3 domain-containing transcription factor NGA1
5os9_B1e-651042163116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G107200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375397.10.0B3 domain-containing transcription factor NGA1 isoform X1
RefseqXP_024440381.10.0B3 domain-containing transcription factor NGA1 isoform X1
SwissprotO827993e-90NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLU5FV560.0U5FV56_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10290.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.13e-78B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]