PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G106300.5
Common NamePOPTR_0014s10190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 341aa    MW: 38324.4 Da    PI: 6.4395
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G106300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.4e-11148199155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+ ++   + +K + a+i   A++++k+L+
  Potri.014G106300.5 148 QRMNHIAVERNRRRLMNDHLNSLRSLMTPS---YIQKGDQASIIGGAIDFVKELE 199
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.49E-11146203No hitNo description
PROSITE profilePS5088814.513147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15147214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-12148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MPFLQMLQTV ETPPFFPYKE PSFQTLLKLQ HLQKPWNMNT FYMPETDTQV QPLELESCVT  60
HDIVDLHSPV KSETKEHPNP HSNSCLEGVS PEPAEPNSDS SIPWRAQPQT VPNMTTHFSE  120
SSTLIITRER RKRKRTRATK NKEEVESQRM NHIAVERNRR RLMNDHLNSL RSLMTPSYIQ  180
KGDQASIIGG AIDFVKELEQ LVQSLEAQKK IREIETASTA GISPNQYSTS QPQCDLLLEE  240
GGTCEEERTV KKKSEATEIE VAAVQNHVNL KIKCQRIPGQ LLRAIVALED LGLTVLHLNI  300
TSSQATVLYS FNLKLEDNCK LGSTDEVAAA AHQIFSSISG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RRKRKR
2148159RMNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G106300.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375392.20.0transcription factor bHLH70 isoform X2
RefseqXP_024440692.10.0transcription factor bHLH70 isoform X2
SwissprotO810377e-81BH070_ARATH; Transcription factor bHLH70
TrEMBLA0A2K1XTK00.0A0A2K1XTK0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.13e-78bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]