PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G106300.1
Common NamePOPTR_0014s10190g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 391aa    MW: 44137.8 Da    PI: 5.3262
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G106300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.61.7e-11198249155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+ +N+ ++ Lr+l+ ++   + +K + a+i   A++++k+L+
  Potri.014G106300.1 198 QRMNHIAVERNRRRLMNDHLNSLRSLMTPS---YIQKGDQASIIGGAIDFVKELE 249
                         79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.82E-11196253No hitNo description
PROSITE profilePS5088814.513197248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.5E-15197264IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.7E-9198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-12198260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-8203254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MERLQGPINS CFLEEHSLDL GCFDQVFINT ESLRFEEEEP HISSPSFEDK MPFLQMLQTV  60
ETPPFFPYKE PSFQTLLKLQ HLQKPWNMNT FYMPETDTQV QPLELESCVT HDIVDLHSPV  120
KSETKEHPNP HSNSCLEGVS PEPAEPNSDS SIPWRAQPQT VPNMTTHFSE SSTLIITRER  180
RKRKRTRATK NKEEVESQRM NHIAVERNRR RLMNDHLNSL RSLMTPSYIQ KGDQASIIGG  240
AIDFVKELEQ LVQSLEAQKK IREIETASTA GISPNQYSTS QPQCDLLLEE GGTCEEERTV  300
KKKSEATEIE VAAVQNHVNL KIKCQRIPGQ LLRAIVALED LGLTVLHLNI TSSQATVLYS  360
FNLKLEDNCK LGSTDEVAAA AHQIFSSISG *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184RRKRKR
2198209RMNHIAVERNRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.88370.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G106300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375391.20.0transcription factor bHLH67 isoform X1
TrEMBLA0A2K1XTL10.0A0A2K1XTL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s10190.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.15e-81bHLH family protein