PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G103700.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 494aa    MW: 54887.8 Da    PI: 6.2843
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G103700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12317362454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av YI+++
  Potri.014G103700.1 317 NHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVSYINEM 362
                         799***********************6.....4***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.0E-5425208IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.577313362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-17316376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.58E-13316366No hitNo description
Gene3DG3DSA:4.10.280.103.6E-16317377IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-9317362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-15319368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MEGLIISPSS SSSLVSLSHE TPPTLQQRLQ FIVQSQPDRW SYSIFWQASK DDSGQIFLAW  60
GDGHFQGSKD TSPKLSTTNN SRMSTSNSER KRVMKGIHSL LDECHDLDMS LMDDTDSTDT  120
EWFYVMSLTR SFSPGDGILG KAYTTGSLIW LTGGHELQFY NCERVKEAQM HGIETLICIP  180
TSCGVLELGS SCVIRENWGI VQQAKSLFVS DLNSCLVPKG PNNPCQEPIQ FLDRNISLAD  240
GGIIAGLQED DHTIEHGEKR TQERAETKKD NVNKLGQSYV DSEHSDSDFH FVAVNIERRI  300
PKKRGRKPGL GRGAPLNHVE AERQRREKLN HRFYALRAVV PNVSRMDKAS LLSDAVSYIN  360
EMKAKVDKLE SKLQRESKKV KLEVADTMDN QSTTTSVDQA ACRPNSNSGG AGLALEVEVK  420
FVGNDAMIRV QSDNVNYPGS RLMSALRDLE FQVHHASMSS VNELMLQDVV VRVPDGLRTE  480
EALKSALLGR LEQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A4e-35242088192Transcription factor MYC3
4rqw_B4e-35242088192Transcription factor MYC3
4rs9_A4e-35242088192Transcription factor MYC3
4yz6_A4e-35242088192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G103700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440348.10.0transcription factor MYC2 isoform X1
TrEMBLA0A2K1XTE60.0A0A2K1XTE6_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Representative plantOGRP8004717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00870.11e-79bHLH family protein