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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.014G100100.2 |
| Common Name | POPTR_0014s09560g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
ARF |
| Protein Properties |
Length: 532aa MW: 59181.6 Da PI: 8.5501 |
| Description |
ARF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.014G100100.2 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | B3 | 56.4 | 5.4e-18 | 8 | 70 | 34 | 98 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF + +++el+v+++r
Potri.014G100100.2 8 QELAARDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGDNGELRVGLRR 70
58999*********************************************..3489999***998 PP
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| 2 | Auxin_resp | 93.2 | 4.4e-31 | 96 | 175 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83
a+ha+ t++ F v+Y+Pr+ ++++ ++k+++a+k+ +svGmRfkm+fe+ed +err++Gt+vgv d++p +W++S WrsLk
Potri.014G100100.2 96 ASHAVLTHTLFVVYYKPRT--NQYIIGLNKYLEAVKNGFSVGMRFKMRFEGEDTPERRFTGTIVGVGDISP-EWSGSIWRSLK 175
689999************6..99**********************************************99.*********96 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 532 aa
Download sequence Send
to blast |
MSQATPTQEL AARDLHGYEW RFKHIFRGQP RRHLLTTGWS TFVTSKRLVA GDSFVFLRGD 60
NGELRVGLRR VARQQCSIPS SVISSQSMHL GVLATASHAV LTHTLFVVYY KPRTNQYIIG 120
LNKYLEAVKN GFSVGMRFKM RFEGEDTPER RFTGTIVGVG DISPEWSGSI WRSLKIQWDE 180
PATIQRPERV SPWDIEPFAA PASPNLTQQV VKSKRPRSVD IPTSEITTNP AASAFWYHGP 240
TQSRELVQRG SITEVQSSES HVWSMRQKEI DSNLNNNGSC NSRARPEGIW PSSSHMNVSL 300
NFFPDSAADN KCAKTQSIIS GFASSISRQS NGLINEQVER GRKFENSVGC RLFGIDLTSN 360
SGIAAVPEKE PAYPIVDYNG TQGLVPASSE AEKAQTMDVS MSSKEQKQVV PDTLAKESQS 420
KQGSTTSTRT RTKVQMQGGY KDLINELEKM FETGGELSTR EKWAVVFTDN EGDMMLVGDD 480
PWPEFCKMVK KIFIYSSEEV KKMSTRCKLP ASSFEGEGTV VSMESEHKSD A*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 4ldv_A | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
| 4ldw_A | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
| 4ldw_B | 3e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
| 4ldx_A | 4e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
| 4ldx_B | 4e-93 | 1 | 198 | 155 | 355 | Auxin response factor 1 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT164698 | 0.0 | KT164698.1 Populus tomentosa clone Potom.002G07206 auxin response factor 11 mRNA, complete cds. |
