PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G097300.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 324aa    MW: 36926.3 Da    PI: 7.1324
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G097300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.4e-12186211126
                         --S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                         y   +C+++ +tG+C yGd+CkF+H+
  Potri.014G097300.1 186 YQPDICKDYKETGYCGYGDSCKFMHD 211
                         67789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9184216IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878185213IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7185212IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-12186216IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-10186211IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.103.5E-13255303IPR013083Zinc finger, RING/FYVE/PHD-type
SuperFamilySSF578501.16E-12261304No hitNo description
PfamPF139202.5E-9261302No hitNo description
PROSITE profilePS5008910.616262300IPR001841Zinc finger, RING-type
CDDcd001622.99E-8262303No hitNo description
SMARTSM001848.7E-5262299IPR001841Zinc finger, RING-type
PROSITE patternPS005180277286IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MADPTEREPQ QTEAVCNFFR KPMKNKNIRK RMIDEDEDED SKTQTSLLHS QKKAPKADNK  60
LYFSTGPLKK SSESNAEPER LLFQFESSKE IQVQHDSRAT ATLETETEFS KDARAIRERA  120
LKQADDALKG KKMSSGDEKL YKGIHGYTDH KAGFRREQTI SSEKAGGSHG PLRASAHIRV  180
SARFDYQPDI CKDYKETGYC GYGDSCKFMH DRGDYKSGWQ MEKEWEEAEK ARKRNLALGM  240
DDEEVGGAGH DDDDEDELPF ACFICRENFV DPVMTKCKHY FCEHCALKHH AKNKKCFVCN  300
EPTLGIFNAA HEIRKKMADA GKR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M3e-6396317113317RING finger protein 113A
5z58_M3e-6396317113317RING finger protein 113A
6ff4_t3e-6396317113317RING finger protein 113A
6ff7_t3e-6396317113317RING finger protein 113A
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.68470.0bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G097300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441486.10.0zinc finger CCCH domain-containing protein 1
SwissprotQ8GX841e-175C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A2K1XT330.0A0A2K1XT33_POPTR; Uncharacterized protein
STRINGcassava4.1_027613m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF70823348
Representative plantOGRP58961720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.11e-166C3H family protein