|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.014G094500.1 |
Common Name | POPTR_0014s09020g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
ERF |
Protein Properties |
Length: 315aa MW: 36090.2 Da PI: 5.6846 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G094500.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 65.9 | 8.1e-21 | 117 | 167 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
++y+GVr+++ +grW+AeIrdp+ r +r++lg+++taeeAa +++a+ +++g
Potri.014G094500.1 117 KKYRGVRQRP-WGRWAAEIRDPY----RrTRVWLGTYDTAEEAAMVYDQAAIRIKG 167
59********.**********75....34***********************9988 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0042991 | Biological Process | transcription factor import into nucleus |
GO:0048825 | Biological Process | cotyledon development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 315 aa
Download sequence Send
to blast |
MFSPKNQTHK RLDCIKKMDR FSTKYTEHKT VTNKLVRWED SKATRIVRIS VTDGNATDSS 60 GDENEEPKIQ HPRIKKHINE IRMTNCSDRE AEDAKKSPGQ QVVKKNSRDQ YYYPEGKKYR 120 GVRQRPWGRW AAEIRDPYRR TRVWLGTYDT AEEAAMVYDQ AAIRIKGPDA QTNFTNTLVS 180 KQHTPDVDIN VNISGYDSGK ESHNSLCSPT SVLRFHSTGE PGPESQAAVQ SDCCWRQNQE 240 VVQEEILKGG DDECLVMDPL CLKEFWDFES PAPIFFEECS VPGTVLREDY ADMPVHLDCD 300 FGSCLWDVDK YFEA*
|
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC208094 | 0.0 | AC208094.1 Populus trichocarpa clone JGIACSB09-L10, complete sequence. |