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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G083700.1 | ||||||||
Common Name | POPTR_0014s07940g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | BES1 | ||||||||
Protein Properties | Length: 679aa MW: 75873.8 Da PI: 6.763 | ||||||||
Description | BES1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF822 | 139.4 | 3.6e-43 | 52 | 190 | 2 | 133 |
DUF822 2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl.eeaeaagssas. 87 g++ +++ +E+E++k+RER+RRai+a+i+aGLR++Gny+l++raD+n+V++AL+reAGwvv +DGtt++ +gs+p +++a+ ss+s Potri.014G083700.1 52 GTRMSRPLEEKERTKLRERHRRAITARILAGLRRHGNYNLRVRADINDVIAALAREAGWVVLPDGTTFPsrsQGSRPAgGTSAAVTSSSSh 142 45556789************************************************************98888999996444444333332 PP DUF822 88 .aspesslq.sslkssalaspvesysaspksssfpspssldsislasa 133 +s+ ++ + +s ++ ve s+++k +p ps +d ++++ Potri.014G083700.1 143 lVSQPTPPGsLGGVSPGHRTSVEYNSCRMKGAFIPNPSPYDLSASTQS 190 3455555444667899999*********************98866543 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05687 | 4.7E-37 | 55 | 183 | IPR008540 | BES1/BZR1 plant transcription factor, N-terminal |
SuperFamily | SSF51445 | 1.3E-179 | 237 | 674 | IPR017853 | Glycoside hydrolase superfamily |
Gene3D | G3DSA:3.20.20.80 | 9.6E-196 | 240 | 671 | IPR013781 | Glycoside hydrolase, catalytic domain |
Pfam | PF01373 | 8.6E-108 | 244 | 663 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 275 | 289 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 296 | 314 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 318 | 339 | IPR001554 | Glycoside hydrolase, family 14 |
PROSITE pattern | PS00506 | 0 | 322 | 330 | IPR018238 | Glycoside hydrolase, family 14, conserved site |
PRINTS | PR00842 | 4.0E-8 | 401 | 410 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 3.8E-71 | 411 | 433 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 484 | 503 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 518 | 534 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 535 | 546 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00750 | 3.8E-71 | 553 | 576 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 4.0E-8 | 556 | 566 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00750 | 3.8E-71 | 593 | 615 | IPR001554 | Glycoside hydrolase, family 14 |
PRINTS | PR00842 | 4.0E-8 | 644 | 658 | IPR001371 | Glycoside hydrolase, family 14B, plant |
PRINTS | PR00842 | 4.0E-8 | 659 | 673 | IPR001371 | Glycoside hydrolase, family 14B, plant |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000272 | Biological Process | polysaccharide catabolic process | ||||
GO:0048831 | Biological Process | regulation of shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0016161 | Molecular Function | beta-amylase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 679 aa Download sequence Send to blast |
MDVKEEDDDN RGKLIAAQMM VGMDGGMTSN SSNNQFQHHQ QFQEHVSSPG GGTRMSRPLE 60 EKERTKLRER HRRAITARIL AGLRRHGNYN LRVRADINDV IAALAREAGW VVLPDGTTFP 120 SRSQGSRPAG GTSAAVTSSS SHLVSQPTPP GSLGGVSPGH RTSVEYNSCR MKGAFIPNPS 180 PYDLSASTQS QTPGMVGEGR EQTESDPRVG GSMDTINDKQ IVDIPPIPKL PEQDFAGSPF 240 IPVYVMLPLG AINMKCELVD PDGLLKQLKV LKSANVDGVM VYCWWGIVEA HAPQEYNWNG 300 YKRLFQMVHE LKLKLQVVMS FHECGGNVGD DVCIPLPNWV AEIGRSNPDI FFTDREGRHN 360 PECLSWGIDK ERVLRGRTAI EVYFDYMRSF RAEFDEFFVD GIISMVEVGL GPCGELRYPS 420 CPVKHGWRYP GIGEFQCYDK YFLKSLKKTA EVRGHPFRAR GPDNAGSYNS QPHETGFFCD 480 GGEYDGYYGR FFLNWYARIL VDHGDRVLSL AKLAFEGTRI AVKLLGIHWW YKTSSHAAEL 540 TAGFYNPCNH DGYAAIVAML KKHGAVLNFS CSELWTVDQQ VDFAEAHADP EGLVWQVLNA 600 AWDVGTPVAG ENALPCYDRV TYNKILDNAK PLSDPDGRHF LSFTYLRLSP LLMERQAYME 660 FERFVKRMHG NLHWSSVS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wdr_A | 1e-152 | 240 | 671 | 11 | 444 | Beta-amylase |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.11866 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G083700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441307.1 | 0.0 | LOW QUALITY PROTEIN: beta-amylase 7 | ||||
Swissprot | O80831 | 0.0 | BAM7_ARATH; Beta-amylase 7 | ||||
TrEMBL | A0A3N7FY51 | 0.0 | A0A3N7FY51_POPTR; Beta-amylase | ||||
STRING | POPTR_0014s07940.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10883 | 33 | 39 | Representative plant | OGRP4345 | 9 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45880.1 | 0.0 | beta-amylase 7 |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G083700.1 |
Entrez Gene | 7496966 |
Publications ? help Back to Top | |||
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