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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Potri.014G081200.1 |
| Common Name | POPTR_0014s07700g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
| Family |
MYB |
| Protein Properties |
Length: 317aa MW: 34517 Da PI: 7.0431 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.014G081200.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56 | 9e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEdellv ++k+ G g+W++ ++ g+ R++k+c++rw +yl
Potri.014G081200.1 14 KGAWTPEEDELLVSYIKKNGHGSWRSLPKLAGLLRCGKSCRLRWTNYL 61
79******************************99************97 PP
|
| 2 | Myb_DNA-binding | 45.1 | 2.2e-14 | 68 | 112 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
++T eE++l ++++ lG++ W++Ia+ ++ gRt++++k+ w+++l
Potri.014G081200.1 68 HPFTLEEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 112
589******************.*********.************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MGRTPCCDKN GLKKGAWTPE EDELLVSYIK KNGHGSWRSL PKLAGLLRCG KSCRLRWTNY 60
LRPDIKRHPF TLEEEKLVIQ LHGILGNRWA AIASQLPGRT DNEIKNLWNT HLKKRLLCLG 120
LDPQTHEPFT SRGPANKGPA SPATRHMTQW ESARLEAEAR LSRESSLFLP PIPGKIDCDY 180
FLRIWNSEVG ESFRRINMGG AKTACPSPVS QASSSTKCGS ISAITADISP NLAGSSAAAS 240
NQNEDMECKS CRSDAEDVMA GPDSSSSAES EDSTDSTLQL LLDFPINNDM SFLEGNIDSY 300
ATSSGMLTGT SMIAPL*
|
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM034721 | 4e-42 | KM034721.1 Jatropha curcas clone JcMYB101 MYB family protein gene, complete cds. |
