PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G078500.1 | ||||||||
Common Name | POPTR_0014s07450g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | TCP | ||||||||
Protein Properties | Length: 397aa MW: 42919.2 Da PI: 10.1254 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 121.4 | 1e-37 | 127 | 230 | 2 | 106 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaa 91 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ + + + +s++a+ Potri.014G078500.1 127 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTSSSAE 215 6899************************************************************8888855531..222222222222333 PP TCP 92 ksaakskksqksaas 106 +++++ kk++k++a+ Potri.014G078500.1 216 PDEPNAKKKRKRPAN 230 333333333332222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.0E-31 | 132 | 226 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 133 | 187 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0016021 | Cellular Component | integral component of membrane |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MGPTIYHHLL CPTLFGDWQV QTLLCIDPSI LTFFFGFLFF FLSDRPLLVA PVQKQELGED 60 ASMTTADLRI NSGELRNIRG GPTNKKNYND MSAAPKEEPC TEDRSPTPPL AVVPFAAIPM 120 PLTTVTPPKR ASTKDRHTKV EGRGRRIRMP ATCAARIFQL TRELGHKSDG ETIRWLLEHA 180 EPAIIAATGT GTVPAIAMSV NGTLKIPTTT SSSAEPDEPN AKKKRKRPAN SEYVDVNDSV 240 SVSASLAPIT TRPRQPPQPQ AQQPVAAVPQ GLVPMWAIPS NTVVPGAFFM VPSMPGPFNQ 300 PQIFTFPAAA SPLINISPRP ISSFVSSMQS NIAVALPVSG SKPGKGISRT APSSSSAHTI 360 RTPSTTTNST PHMLRDFSLE IYDKQELQFM SRSSKQ* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00635 | PBM | Transfer from PK14653.1 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G078500.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441268.1 | 0.0 | transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-97 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | B9IC90 | 0.0 | B9IC90_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s07450.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2118 | 30 | 86 | Representative plant | OGRP3178 | 11 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 9e-87 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G078500.1 |
Entrez Gene | 7464910 |