PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G057100.1 | ||||||||
Common Name | POPTR_0014s05620g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 392aa MW: 44596 Da PI: 9.1259 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 41 | 3.5e-13 | 39 | 115 | 17 | 99 |
E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +pkkf++ +g k s + le ++g + ev++ k++g+++l++GWkeF++ L g +vF+++++ f +v +++k Potri.014G057100.1 39 GIPKKFVRLYG--KGLSNKALLEVPNGTVSEVEF--FKSDGKIWLQNGWKEFAEHYSLALGSLLVFEYKKSCHF--HVLILDK 115 69******998..558999***************..********************************998888..9999987 PP | |||||||
2 | B3 | 44.7 | 2.4e-14 | 152 | 227 | 18 | 95 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +pk+fa+++ ++ ++ + +l ++gr+W vk+ + +++ ++ +++GW++F +n L++ D++vF+l++ + e+ +k Potri.014G057100.1 152 IPKSFAQKYFKNDHG--DAVLCVLDGRTWPVKYFVypGNGKAKTQIRSGWNKFTWDNYLEVSDVCVFELTK--CIEMSFK 227 9********766545..69999999********666766666699***********************864..3334333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.9E-19 | 14 | 116 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.1E-19 | 14 | 115 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.68E-14 | 19 | 114 | No hit | No description |
SMART | SM01019 | 1.1E-10 | 26 | 116 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-10 | 39 | 115 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.377 | 40 | 116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.533 | 135 | 234 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-7 | 139 | 234 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 6.67E-16 | 151 | 233 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 9.1E-13 | 151 | 227 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-16 | 152 | 234 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.83E-13 | 152 | 232 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 7.6E-6 | 339 | 387 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-5 | 340 | 386 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 6.104 | 347 | 391 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGSPFKGGNG SFMFNADKPH FFKIFFKKLL LMGSFLYQGI PKKFVRLYGK GLSNKALLEV 60 PNGTVSEVEF FKSDGKIWLQ NGWKEFAEHY SLALGSLLVF EYKKSCHFHV LILDKTTMEI 120 DYSFSMTDGD EEPDLEGEFQ QPRTEETDDD PIPKSFAQKY FKNDHGDAVL CVLDGRTWPV 180 KYFVYPGNGK AKTQIRSGWN KFTWDNYLEV SDVCVFELTK CIEMSFKVIV VRANKDDSHR 240 LAVANQAKPK RSVLIDIDPE FPRDGEDGTS SSHHKYGTKE KGRKSEEDDS LPPEKKIKNS 300 LPHKMANNSR KDAGSGLKTK RLAPLSAIEK EKALRRAYAF KSENPFFFIA IQPAYVCSGA 360 NMSIPFKFAD RYFKEKNGEV ILQVSKDPKL W* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G057100.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011042476.1 | 1e-101 | PREDICTED: B3 domain-containing protein LOC_Os12g40080-like | ||||
TrEMBL | B9MV04 | 0.0 | B9MV04_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s05620.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF98 | 34 | 369 |
Representative plant | OGRP1718 | 5 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18990.1 | 7e-16 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G057100.1 |
Entrez Gene | 18105155 |