|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.014G045100.1 |
Common Name | POPTR_0014s04460g |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
HD-ZIP |
Protein Properties |
Length: 299aa MW: 33145.1 Da PI: 8.2158 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G045100.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 56.9 | 3.5e-18 | 132 | 186 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++keq +Lee F+++++++ +e+ LAk+l+L rqV vWFqNrRa+ k
Potri.014G045100.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTK 186
788899***********************************************98 PP
|
2 | HD-ZIP_I/II | 125.5 | 2.5e-40 | 132 | 221 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rlskeq+ +LEe+F+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
Potri.014G045100.1 132 RKKLRLSKEQSLVLEETFKEHNTLNPKEKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCENLTEENRRLQKEVQELR-AL 221
69*************************************************************************************9.55 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 299 aa
Download sequence Send
to blast |
MGDKNDGLGL SLSLGFDATQ QNHQQQPSLK LNLMPVPSQN NHRKTSLTDL FQSSDRACGT 60 RFFQRGIDMN RVPAAVTDCD DETGVSSPNS TLSSLSGKRS EREQIGEETE AERASCSRDS 120 DDEDGAGGDA SRKKLRLSKE QSLVLEETFK EHNTLNPKEK LALAKQLNLR PRQVEVWFQN 180 RRARTKLKQT EVDCEYLKRC CENLTEENRR LQKEVQELRA LKLSPQLYMH MNPPTTLTMC 240 PSCERVAVSS ASSSSAAAAS SALAPTASTR QPQRPVPINP WATMPVHQRT FDAPASRS*
|
Nucleic Localization
Signal ? help
Back to Top |
|
No. |
Start |
End |
Sequence |
1 | 130 | 136 | SRKKLRL |
2 | 180 | 188 | RRARTKLKQ |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |