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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Potri.014G036900.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
B3 |
Protein Properties |
Length: 362aa MW: 41707.2 Da PI: 8.0702 |
Description |
B3 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.014G036900.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | B3 | 56.1 | 6.6e-18 | 30 | 114 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
l +++ ++l +p kf +h ++k +tl+ +sg +W+v+l + +++++++ GW++Fvk++ L+e+D ++Fk++g+s f v
Potri.014G036900.1 30 L---SAGFDHQLPIPEKFS-NHLKNK-LLENVTLKGPSGSTWQVEL--TTDDNTMFFKHGWEDFVKDHFLEEKDLLIFKYNGESYF--DVL 111
4...4556678*******8.553333.6669***************..999999**************************998888..888 PP
EE- CS
B3 96 vfr 98
+f+
Potri.014G036900.1 112 IFD 114
876 PP
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2 | B3 | 49.8 | 6.2e-16 | 262 | 358 | 1 | 97 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89
f+ v++p +v ++ +v+p ++h +k++++ + ++W+ ++ y k++++ l++GWk+F+ +n+L+e D+++F+ +g+ ++
Potri.014G036900.1 262 FVVVMKPTHVYRKFYMVIPSAWSTRHFRT--LEKKVVILRVKENTWNTNFLYYKSKNSGGLSSGWKSFALDNNLQEFDVCLFEPSGTmnNS 350
7899**********************744..6679*****************99999999***********************88773355 PP
E..EEEEE CS
B3 90 felvvkvf 97
f l v +f
Potri.014G036900.1 351 FVLDVNIF 358
55555555 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MGEETCEDCR GWEEELYWTH FQCTHFFQIL SAGFDHQLPI PEKFSNHLKN KLLENVTLKG 60 PSGSTWQVEL TTDDNTMFFK HGWEDFVKDH FLEEKDLLIF KYNGESYFDV LIFDGQSFCE 120 KAASYFVRKC GHREGDSFVQ TKRKAVEDSV EVTNACPHNG LGGTPEKSAD GYIYKTPVRN 180 SVVSKAINKK TRREVKFSKP IQTRKRVRYE GPSSTAEEIE TKPDVQHIPI GTTYVSSRRM 240 VTEQDKLNAL RLAQTAQTNE GFVVVMKPTH VYRKFYMVIP SAWSTRHFRT LEKKVVILRV 300 KENTWNTNFL YYKSKNSGGL SSGWKSFALD NNLQEFDVCL FEPSGTMNNS FVLDVNIFRV 360 L*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4i1k_A | 5e-14 | 236 | 360 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
4i1k_B | 5e-14 | 236 | 360 | 22 | 142 | B3 domain-containing transcription factor VRN1 |
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