PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Potri.014G036800.3 | ||||||||
Common Name | POPTR_0014s03610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 617aa MW: 68796.5 Da PI: 8.3754 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 59.9 | 4.5e-19 | 19 | 109 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 ff ++ s++l+s rl++p +f+++++gk+++ ++l +sg +W+ l ++ + +++++GW+eFv+++ L+ gD +vF+++g+ +f Potri.014G036800.3 19 FFVIF--SSNLSSERLRIPVSFIKHMEGKTPG--LVSLLGPSGDVWTADL--TQENDDVLFSNGWSEFVRDHFLECGDLLVFRYHGELCF- 102 56666..99**************888888666..7***************..999999**************************999999. PP .EEEEE-S CS B3 92 lvvkvfrk 99 v+vf++ Potri.014G036800.3 103 -SVQVFDQ 109 .9999987 PP | |||||||
2 | B3 | 43.2 | 6.9e-14 | 268 | 357 | 2 | 94 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 + ++++ +v+ s l +p +f +h +++ ++++l++ +g W+v+ ++ +++l +GW Fv++n++++gD+++F+l+++ e Potri.014G036800.3 268 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRTIKGACWSVNSVPaTRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRK--YE 354 56667777888889*******98996..45889***************955677777899***********************9874..33 PP .EE CS B3 92 lvv 94 l+v Potri.014G036800.3 355 LRV 357 344 PP | |||||||
3 | B3 | 48.7 | 1.3e-15 | 495 | 584 | 4 | 96 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 ++ + +v+ s l +p +f +++ ++++++++l +++gr W+v+ + k+++ +++ +GW Fv++n++k gD+++F+l+g+ + + Potri.014G036800.3 495 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILCNLQGRCWTVNSLPDSKGRAvHTFCGGWMAFVRDNNIKIGDICMFELVGKCQM--R 581 566667788889********9996..45899****************6655555579999**********************995444..5 PP EEE CS B3 94 vkv 96 v++ Potri.014G036800.3 582 VQI 584 555 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.12E-23 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-23 | 16 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.08E-18 | 17 | 108 | No hit | No description |
PROSITE profile | PS50863 | 14.579 | 17 | 110 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.2E-17 | 19 | 110 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-17 | 19 | 109 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-20 | 263 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-22 | 264 | 364 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-17 | 265 | 361 | No hit | No description |
SMART | SM01019 | 1.9E-9 | 267 | 363 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.3E-10 | 267 | 357 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.802 | 267 | 363 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.4E-23 | 484 | 585 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.3E-23 | 485 | 586 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.33E-18 | 490 | 584 | No hit | No description |
PROSITE profile | PS50863 | 12.901 | 492 | 588 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.3E-14 | 492 | 588 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 9.1E-13 | 492 | 583 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 617 aa Download sequence Send to blast |
MTKENQSEKM VNVVRRPCFF VIFSSNLSSE RLRIPVSFIK HMEGKTPGLV SLLGPSGDVW 60 TADLTQENDD VLFSNGWSEF VRDHFLECGD LLVFRYHGEL CFSVQVFDQS ACEKEAAFHS 120 KCSQGCSEFC GSTGKKRERE EEAASLEKDF VCARKKVREG SSEFHSAYIE KNREAHISAC 180 DVGGCQHDGV LTTEESLSRQ TNQCGNPANC FATPSQSKAC SEKQEVPIWK RFGKDDDLKL 240 HDRGHMSIFS EREKRVAESF ISCFPYFVRI MKRFNVSGSY TLNIPYQFSM AHLPNCRTEI 300 ILRTIKGACW SVNSVPATRV HTSHTLCGGW MAFVRSNDIN VGDVCIFELV RKYELRVFIL 360 RVGKEGPDME TGKVVSNGEN TGCHAIAHKT ESFPKKSRRN CLKVHSKLIK KAEICDKKEF 420 EKSQATGILR HGNATKDSAS AVLFSMSQTG DGKKQAPIQN GKGVEAEAGL RRLVALDEER 480 AAKSFTSGFP NFVRIMRKFN VSGSYTLKIP HQFSAAYLPN CKTEVILCNL QGRCWTVNSL 540 PDSKGRAVHT FCGGWMAFVR DNNIKIGDIC MFELVGKCQM RVQISGVGHE VVNHQIGNPA 600 SNDLPLLAVP RNDPPS* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Potri.014G036800.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024441435.1 | 0.0 | B3 domain-containing protein Os01g0723500 isoform X2 | ||||
TrEMBL | A0A2K1XQ18 | 0.0 | A0A2K1XQ18_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03610.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G18990.1 | 2e-21 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Potri.014G036800.3 |
Entrez Gene | 18104959 |