PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G036800.1
Common NamePOPTR_0014s03610g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 736aa    MW: 82996.2 Da    PI: 8.3524
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G036800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.5e-16551311799
                         E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                  B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                         ++p +f+++++gk+++   ++l  +sg +W+  l  ++  + +++++GW+eFv+++ L+ gD +vF+++g+ +f   v+vf++
  Potri.014G036800.1  55 RIPVSFIKHMEGKTPG--LVSLLGPSGDVWTADL--TQENDDVLFSNGWSEFVRDHFLECGDLLVFRYHGELCF--SVQVFDQ 131
                         89*****888888666..7***************..999999**************************999999..9999987 PP
2B342.98.9e-14290379294
                         EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                  B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                         + ++++ +v+ s  l +p +f  +h   +++ ++++l++ +g  W+v+    ++   +++l +GW  Fv++n++++gD+++F+l+++   e
  Potri.014G036800.1 290 VRIMKRFNVSGSYTLNIPYQFSMAHL--PNCRTEIILRTIKGACWSVNSVPaTRVHTSHTLCGGWMAFVRSNDINVGDVCIFELVRK--YE 376
                         56667777888889*******98996..45889***************955677777899***********************9874..33 PP

                         .EE CS
                  B3  92 lvv 94 
                         l+v
  Potri.014G036800.1 377 LRV 379
                         344 PP
3B348.31.9e-15517608496
                         E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                  B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++ + +v+ s  l +p +f +++   ++++++++l +++gr W+v+   + k+++ +++ +GW  Fv++n++k gD+++F+l+g+ + +++
  Potri.014G036800.1 517 IMRKFNVSGSYTLKIPHQFSAAYL--PNCKTEVILCNLQGRCWTVNSLPDSKGRAvHTFCGGWMAFVRDNNIKIGDICMFELVGKCQMRCL 605
                         566667788889********9996..45899****************6655555579999**********************998776666 PP

                         EEE CS
                  B3  94 vkv 96 
                          ++
  Potri.014G036800.1 606 AMI 608
                         555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-2040134IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-1141132IPR003340B3 DNA binding domain
SuperFamilySSF1019361.02E-2044134IPR015300DNA-binding pseudobarrel domain
CDDcd100176.01E-1453130No hitNo description
PfamPF023622.2E-1354131IPR003340B3 DNA binding domain
PROSITE profilePS5086313.21156132IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-20285383IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-22286386IPR015300DNA-binding pseudobarrel domain
CDDcd100174.98E-17287383No hitNo description
PfamPF023621.7E-10289379IPR003340B3 DNA binding domain
SMARTSM010191.9E-9289385IPR003340B3 DNA binding domain
PROSITE profilePS5086312.802289385IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-21506603IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.71E-22509608IPR015300DNA-binding pseudobarrel domain
CDDcd100174.61E-17512599No hitNo description
PfamPF023621.4E-12514604IPR003340B3 DNA binding domain
SMARTSM010191.9E-11514612IPR003340B3 DNA binding domain
PROSITE profilePS5086312.308514612IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MTKENQSEKM VNVVRRPCFF VIFSSNLSSE RLILDLLDIS LITGLTQSKL FTWQRIPVSF  60
IKHMEGKTPG LVSLLGPSGD VWTADLTQEN DDVLFSNGWS EFVRDHFLEC GDLLVFRYHG  120
ELCFSVQVFD QSACEKEAAF HSKCSQGCSE FCGSTGKKRE REEEAASLEK DFVCARKKVR  180
EGSSEFHSAY IEKNREAHIS ACDVGGCQHD GVLTTEESLS RQTNQCGNPA NCFATPSQSK  240
ACSEKQEVPI WKRFGKDDDL KLHDRGHMSI FSEREKRVAE SFISCFPYFV RIMKRFNVSG  300
SYTLNIPYQF SMAHLPNCRT EIILRTIKGA CWSVNSVPAT RVHTSHTLCG GWMAFVRSND  360
INVGDVCIFE LVRKYELRVF ILRVGKEGPD METGKVVSNG ENTGCHAIAH KTESFPKKSR  420
RNCLKVHSKL IKKAEICDKK EFEKSQATGI LRHGNATKDS ASAVLFSMSQ TGDGKKQAPI  480
QNGKGVEAEA GLRRLVALDE ERAAKSFTSG FPNFVRIMRK FNVSGSYTLK IPHQFSAAYL  540
PNCKTEVILC NLQGRCWTVN SLPDSKGRAV HTFCGGWMAF VRDNNIKIGD ICMFELVGKC  600
QMRCLAMILP HEVHGRVQPS LDMYEFYVSI FGEHYNARVS LLVRFFLHEF YVGFSYQAEL  660
LFACVYQSVI LVFEPRGGTR RWLKEVETFF KARSVIRHFW GFMNLPPLIF HATGSRPCNC  720
HCTCYVSCLA CSGNN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G036800.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441435.10.0B3 domain-containing protein Os01g0723500 isoform X2
TrEMBLA0A2K1XQ180.0A0A2K1XQ18_POPTR; Uncharacterized protein
STRINGPOPTR_0014s03610.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF114703238
Representative plantOGRP7653917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-18B3 family protein