PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Potri.014G031600.2

Common Name

POPTR_0014s03120g

Organism

Populus trichocarpa

Taxonomic ID

3694

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Protein Properties

Length: 228aa MW: 25504.5 Da PI: 10.5445

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.014G031600.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	46.9	5e-15	127	217	1	98
EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l +lp +f++++ ++++ +tl de+ +++v++ r+++ l++GWk+F+ a+gL +gD vvF+l++ + Potri.014G031600.2 127 FIKSMLQSHVTGGFWLgCLPLDFCRRNL--PRRGDFITLIDEDADEYQVTYLARQNG----LSGGWKGFAVAHGLLDGDAVVFQLIK--PT 209 899********99999**9994..345568***********555555....9********************997..55 PP ..EEEEE- CS B3 91 elvvkvfr 98 +++v ++r Potri.014G031600.2 210 TCKVYIIR 217 56788776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.2E-17	121	219	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.85E-21	121	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.39E-23	125	217	No hit	No description
Pfam	PF02362	1.4E-12	127	217	IPR003340	B3 DNA binding domain
SMART	SM01019	7.4E-19	127	219	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.588	145	219	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MAAKVTAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPLKRSK PRVVEKQVVV 60 VRRSNRIANK PAPFFKEAVI DRVVIPRRIS KAADLSNLVF ATDEARAKAI EKAEKLQSDL 120 GSDYPTFIKS MLQSHVTGGF WLGCLPLDFC RRNLPRRGDF ITLIDEDADE YQVTYLARQN 180 GLSGGWKGFA VAHGLLDGDA VVFQLIKPTT CKVYIIRVNG SEQGNSL*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.3519	0.0	bud\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.014G031600.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146978	0.0	EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374960.1	1e-168	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	2e-68	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	U5FTX0	1e-167	U5FTX0_POPTR; Uncharacterized protein
STRING	POPTR_0014s03120.1	1e-168	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	6e-51	B3 family protein

Link Out ? help Back to Top
Phytozome	Potri.014G031600.2
Entrez Gene	18104912

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]