PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.014G031600.1 | ||||||||
Common Name | POPTR_0014s03120g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 228aa MW: 25504.5 Da PI: 10.5445 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46.9 | 5e-15 | 127 | 217 | 1 | 98 |
EEEE-..-HHHHTT-E.E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrl.vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l +lp +f++++ ++++ +tl de+ +++v++ r+++ l++GWk+F+ a+gL +gD vvF+l++ + Potri.014G031600.1 127 FIKSMLQSHVTGGFWLgCLPLDFCRRNL--PRRGDFITLIDEDADEYQVTYLARQNG----LSGGWKGFAVAHGLLDGDAVVFQLIK--PT 209 899**********99999******9994..345568***************555555....9**********************997..55 PP ..EEEEE- CS B3 91 elvvkvfr 98 +++v ++r Potri.014G031600.1 210 TCKVYIIR 217 56788776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 3.2E-17 | 121 | 219 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.85E-21 | 121 | 220 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.39E-23 | 125 | 217 | No hit | No description |
Pfam | PF02362 | 1.4E-12 | 127 | 217 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-19 | 127 | 219 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 10.588 | 145 | 219 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MAAKVTAYEE SRRKRMEENK KRMEALNLHK LSRALKISTP TKSSPLKRSK PRVVEKQVVV 60 VRRSNRIANK PAPFFKEAVI DRVVIPRRIS KAADLSNLVF ATDEARAKAI EKAEKLQSDL 120 GSDYPTFIKS MLQSHVTGGF WLGCLPLDFC RRNLPRRGDF ITLIDEDADE YQVTYLARQN 180 GLSGGWKGFA VAHGLLDGDA VVFQLIKPTT CKVYIIRVNG SEQGNSL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.3519 | 0.0 | bud| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.014G031600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146978 | 0.0 | EF146978.1 Populus trichocarpa clone WS01225_L06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374960.1 | 1e-168 | B3 domain-containing protein At5g42700 | ||||
Swissprot | Q9FMZ4 | 2e-68 | Y5270_ARATH; B3 domain-containing protein At5g42700 | ||||
TrEMBL | U5FTX0 | 1e-167 | U5FTX0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0014s03120.1 | 1e-168 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3336 | 31 | 68 |
Representative plant | OGRP995 | 16 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42700.1 | 6e-51 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.014G031600.1 |
Entrez Gene | 18104912 |
Publications ? help Back to Top | |||
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