PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G027300.1
Common NamePOPTR_0014s02720g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 266aa    MW: 29538.4 Da    PI: 9.0921
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G027300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.7e-08167207954
                         HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          r RR+ri +++  L++l+P       +K++ a++L +A++Y+k L
  Potri.014G027300.1 167 ARHRRERISERIRILQRLVPGG-----TKMDTASMLDEAIHYVKFL 207
                         699*****************87.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.434158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-13159218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.79E-14162217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-13164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.9E-6168207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.22E-6181212No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MEIDLLKSAT EDQTEMMMMI DKFPEFYGAC NDVADHLSPT DQFLAASVSD SSVPHFNTDN  60
PHSANLPPFM NLPSTLSFNS NNTPIQDQSP RAFISNPSTS RWRGVGELPG TANDYATPSR  120
KKNSMAAMRE MIFRIAAMQP IHIDPESVKP PKRRNVKISK DPQSVAARHR RERISERIRI  180
LQRLVPGGTK MDTASMLDEA IHYVKFLKTQ VQSLERAQAN RPTATTGIGF PVAMTSGSYL  240
PVGKGCHQQP AHHHHHQNVQ HYGDA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G027300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006374919.10.0transcription factor HEC2
TrEMBLB9MVS40.0B9MVS4_POPTR; Uncharacterized protein
STRINGPOPTR_0014s02720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65134141
Representative plantOGRP7611568
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67060.12e-42bHLH family protein