PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G156200.1
Common NamePOPTR_0013s15220g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 224aa    MW: 24254.4 Da    PI: 8.5926
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G156200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260128.33.3e-40421411100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         +CaaCk+lrr+Ca++C+++pyf  ++p+kfa+vhk++Gasnv+kll ++pe++r d+++slvyeA+ r+rdPvyG++g i++lqqq+++l+
  Potri.013G156200.1  42 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVYGASNVSKLLMEVPESQRVDTANSLVYEANLRLRDPVYGSMGAISALQQQIQSLQ 132
                         7****************************************************************************************** PP

              DUF260  92 aelallkee 100
                         ael+++++e
  Potri.013G156200.1 133 AELSAIRAE 141
                         ****99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.77441142IPR004883Lateral organ boundaries, LOB
PfamPF031954.8E-4042139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MSRDRERSEE LGKRIKRESD ASSFMGRRQM LGPPVILNTV TPCAACKLLR RRCAEECPFS  60
PYFSPHEPQK FAAVHKVYGA SNVSKLLMEV PESQRVDTAN SLVYEANLRL RDPVYGSMGA  120
ISALQQQIQS LQAELSAIRA EILNYKYREA AAATNIISST HPALVSSATV SISTPSQTLA  180
PPPQPPPPSV VVSSSSSSSL YTPPTSTSGY STISSENNVP YFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-424214911118LOB family transfactor Ramosa2.1
5ly0_B2e-424214911118LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G156200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB9707800.0AB970780.1 Populus tremula x Populus tremuloides PtxtLBD15a mRNA for LOB domain-containing protein 15, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319420.11e-161LOB domain-containing protein 15 isoform X1
SwissprotQ8L5T51e-77LBD15_ARATH; LOB domain-containing protein 15
TrEMBLB9I6X01e-160B9I6X0_POPTR; LBD family protein
STRINGPOPTR_0013s15220.11e-161(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22983486
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.14e-72LOB domain-containing protein 15
Publications ? help Back to Top
  1. Ohashi-Ito K,Iwamoto K,Fukuda H
    LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements.
    Plant Cell Physiol., 2018. 59(5): p. 989-996
    [PMID:29444288]