PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G154500.1
Common NamePOPTR_0013s15060g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 688aa    MW: 75286 Da    PI: 8.5217
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G154500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.72.2e-12635683247
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
     Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                         +rW+ eE++ l +avk++G+g+Wk+I +      + Rt+ ++k++w++ 
  Potri.013G154500.1 635 KRWSLEEEDALREAVKKYGKGNWKLIWNSRRdvfQERTEVDLKDKWRNM 683
                         69*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.758629687IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-12630685IPR009057Homeodomain-like
SuperFamilySSF466892.58E-14631685IPR009057Homeodomain-like
SMARTSM007175.0E-8633686IPR001005SANT/Myb domain
PfamPF002491.7E-9635683IPR001005SANT/Myb domain
CDDcd116609.60E-19635685No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0031627Biological Processtelomeric loop formation
GO:0043067Biological Processregulation of programmed cell death
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 688 aa     Download sequence    Send to blast
MSSMAATTRR RSFDPDITRW VIEFILRQLQ IPVLTINKIL TNRHVPLSNT SPRFKKTLLL  60
RQIDADIEDG SVSEKTLDAI EMVEQIDRNE GDLIMDSMKN AYCAVAVECT VKYMLGNLQR  120
ARKGKFLEAV ERVWKNRVAG LKREGKSELV TGKLMKYFEE MEVALKDDVV AKRWLRMNTR  180
NEAAEMVRIY LGEAVAVSGP VFVEMVARME MRGDGGLLCR KRGEGENEGV EVNLGGGELN  240
GFVEKSREGG GGENGAAGVN VGGGRVCIDV DAGEGCSRLA DGNLELGPAD MPAKESREGG  300
GGENGAVEVN VGGGRVCIDV NAGEGCSRSD DDNLELGPAD MPAKKSSEIQ KNNMVRKHRH  360
VVPIKRSKGP VKITNTETAV GVVASSLYDT ITTDKVNTAR GKLIASSKEL RARVKDPLPD  420
TIKQADNIMV EMARNLSNQG TLAEIQSGKG ADTVISELAR KIINPDPPGK NQNGKDAGSS  480
FLSANQTAVP SAQNQCGKDT DACNPSANHT VEPFAENPNQ SEVDAANHFT NQTAVPSIRN  540
EKGKGVDAPN LSANLSKKAN TGVASCSHQN NVSKPSLMER NATARTFEWD DSIDDSSEGT  600
GDQMNRIHLD SPKRKAVSPL KKYELARFAK RRKPKRWSLE EEDALREAVK KYGKGNWKLI  660
WNSRRDVFQE RTEVDLKDKW RNMTRYG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1612632KRKAVSPLKKYELARFAKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G154500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376552.20.0uncharacterized protein LOC7464725 isoform X1
TrEMBLA0A2K1Y6380.0A0A2K1Y638_POPTR; Uncharacterized protein
STRINGPOPTR_0013s15060.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Representative plantOGRP15031424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.22e-19MYB_related family protein