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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.013G135600.1 |
Common Name | POPTR_0013s13920g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
ERF |
Protein Properties |
Length: 470aa MW: 52071.2 Da PI: 6.7401 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.013G135600.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 60 | 5.4e-19 | 231 | 281 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
y+GVr+++ +g+WvAeIr p++ r+r +lg+f+tae+Aa a+++ + kl+ge
Potri.013G135600.1 231 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAALAYDREAFKLRGE 281
59******9.**********955...5**************************97 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009651 | Biological Process | response to salt stress |
GO:2000070 | Biological Process | regulation of response to water deprivation |
GO:0005634 | Cellular Component | nucleus |
GO:0005737 | Cellular Component | cytoplasm |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 470 aa
Download sequence Send
to blast |
MAAAKNNFGK SKKGVVDETR KMMMEQDWQL DRGKKEADVS FERRQWKPVF GEASLMDRPL 60 KKICSPERQE QIQSSASLAH QLPSCFSVSS SSASTLSLYP PSSSPSPMSS SSSRLVFPFA 120 FEGSNQPIQC PQQFRTNPSL PIFHPLSQVA QNQQQMISFG QNQQHGIAYP PFYAGGLPMA 180 DHHHHHQQLF QYWSDALNLS PRGRMMMMNK LGPDGRPLFR PPIQPINTRK LYRGVRQRHW 240 GKWVAEIRLP RNRTRLWLGT FDTAEDAALA YDREAFKLRG ENARLNFPEL FLNKDKATST 300 APSSTVSSPP TSNQSLKPKQ AQEGLNLQAE TMSPPILPPQ PPPEQPPGDH PDDDSGMGSS 360 GATVSDEIQA VAEGSSAGEG ISGSQELEWG DMAEAWYNAI QAGWGPGSPV WDDLDSTNNL 420 LLQSHLPFVN PNQQQFNDSC CVLQDNMGSA SSSSSSFFPM KSYFLKDQD*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC214033 | 0.0 | AC214033.1 Populus trichocarpa clone POP046-C14, complete sequence. |