PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G123900.1
Common NamePOPTR_0013s12770g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 230aa    MW: 25924.2 Da    PI: 8.4766
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G123900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260117.39.2e-3716110195
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlk 91 
                         aCa+Ck++r++Ca+dCvlapyfpae++++f++vhk+FG+snv+kl+k++++e+++++++slv+eA +r++dPv G++g ++k+q++le  k
  Potri.013G123900.1  16 ACASCKHQRKRCAEDCVLAPYFPAERMQEFQAVHKVFGVSNVIKLVKDVDKERQKETADSLVWEASCRQDDPVLGCFGKFKKIQEELELYK 106
                         7***************************************************************************************999 PP

              DUF260  92 aela 95 
                          ++ 
  Potri.013G123900.1 107 MQTP 110
                         8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.95215116IPR004883Lateral organ boundaries, LOB
PfamPF031951.9E-3516109IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MQRGRDSNNR VAMHQACASC KHQRKRCAED CVLAPYFPAE RMQEFQAVHK VFGVSNVIKL  60
VKDVDKERQK ETADSLVWEA SCRQDDPVLG CFGKFKKIQE ELELYKMQTP LPNQNILRQR  120
QGGAAYNKQP LLLAWNATHG INNRGNGIGG GLANNNMGNY GHDNSSLIVD SVPHSYPWQF  180
VRGQDKSNPE RDATSLLLPI QPSPPPHPFS VNGFNQQEYY HPVMRYACE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-221712212117LOB family transfactor Ramosa2.1
5ly0_B3e-221712212117LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G123900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2131560.0AC213156.1 Populus trichocarpa clone POP076-I18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024438951.11e-168LOB domain-containing protein 2
TrEMBLA0A2K1Y4S91e-166A0A2K1Y4S9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s12770.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF127222534
Representative plantOGRP6016318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06280.12e-40LOB domain-containing protein 2