PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G090400.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 353aa    MW: 39032.5 Da    PI: 6.0068
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G090400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.7e-28173233259
                         --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                         +Dg++WrKYGqKe+ gs+fpr+YYrCt++   +C +kk+v+r ++dp ++e+ Y+geH+++
  Potri.013G090400.1 173 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyHCLAKKQVQRLDDDPYTFEVAYRGEHTCH 233
                         7****************************9999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.7E-26167234IPR003657WRKY domain
SuperFamilySSF1182906.41E-25170234IPR003657WRKY domain
SMARTSM007745.6E-36172234IPR003657WRKY domain
PROSITE profilePS5081120.174173235IPR003657WRKY domain
PfamPF031066.5E-25173233IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MDETISLILH GCKLAKDLEL NLANLASQPE IFSRSCEDII RVFINARERL NVHQQDTTSY  60
THHMLFREPR ELQQQQNIDP SLQEWLRTSC PSAMETLFHQ SQVLVPEKTQ MGSGDFVIEL  120
GSRSDHVQAI DASDPGRGSS SSSQRPRRRK DDAERRTVRV PAQQFGNTEI PPEDGFTWRK  180
YGQKEILGSR FPRAYYRCTH QKLYHCLAKK QVQRLDDDPY TFEVAYRGEH TCHMSATAPS  240
VPPAAADIAQ EMAQTMSAQP QPSAATSLAR WLEFSLGSGG SAGCSSSSMA AGAGSSGEGP  300
STAGRYSKEA DCPIIDMADA MFNSGSSSTN SMEFIFPSIL EEKWDQASDK KP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19173232968OsWRKY45
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145149PRRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G090400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439297.10.0WRKY transcription factor 55
TrEMBLA0A2K1Y3A00.0A0A2K1Y3A0_POPTR; Uncharacterized protein
STRINGPOPTR_0013s09460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-50WRKY DNA-binding protein 55