PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G090400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | WRKY | ||||||||
Protein Properties | Length: 353aa MW: 39032.5 Da PI: 6.0068 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 89.1 | 3.7e-28 | 173 | 233 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqKe+ gs+fpr+YYrCt++ +C +kk+v+r ++dp ++e+ Y+geH+++ Potri.013G090400.1 173 EDGFTWRKYGQKEILGSRFPRAYYRCTHQklyHCLAKKQVQRLDDDPYTFEVAYRGEHTCH 233 7****************************9999**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-26 | 167 | 234 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-25 | 170 | 234 | IPR003657 | WRKY domain |
SMART | SM00774 | 5.6E-36 | 172 | 234 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.174 | 173 | 235 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.5E-25 | 173 | 233 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 353 aa Download sequence Send to blast |
MDETISLILH GCKLAKDLEL NLANLASQPE IFSRSCEDII RVFINARERL NVHQQDTTSY 60 THHMLFREPR ELQQQQNIDP SLQEWLRTSC PSAMETLFHQ SQVLVPEKTQ MGSGDFVIEL 120 GSRSDHVQAI DASDPGRGSS SSSQRPRRRK DDAERRTVRV PAQQFGNTEI PPEDGFTWRK 180 YGQKEILGSR FPRAYYRCTH QKLYHCLAKK QVQRLDDDPY TFEVAYRGEH TCHMSATAPS 240 VPPAAADIAQ EMAQTMSAQP QPSAATSLAR WLEFSLGSGG SAGCSSSSMA AGAGSSGEGP 300 STAGRYSKEA DCPIIDMADA MFNSGSSSTN SMEFIFPSIL EEKWDQASDK KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-19 | 173 | 232 | 9 | 68 | OsWRKY45 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 149 | PRRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00304 | DAP | Transfer from AT2G40740 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G090400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439297.1 | 0.0 | WRKY transcription factor 55 | ||||
TrEMBL | A0A2K1Y3A0 | 0.0 | A0A2K1Y3A0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s09460.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 3e-50 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G090400.1 |