PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G079800.1
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 500aa    MW: 55091.5 Da    PI: 5.6195
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G079800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1124.1e-35171082102
                         HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXX CS
        HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkke 92 
                         Fl+k+y++++d+++++++sws+++nsfvv++  ef++++LpkyFkhsnf+SFvRQLn+YgF+kv+ ++          eF+++ F +g+k+
  Potri.013G079800.1  17 FLSKTYDMVDDPSTDSVVSWSSSNNSFVVWNVPEFQTDLLPKYFKHSNFSSFVRQLNTYGFRKVDPDR---------FEFANEGFLRGQKH 98 
                         9*****************************************************************99.........67************ PP

                         XXXXXXXXXX CS
        HSF_DNA-bind  93 llekikrkks 102
                         ll++i rkk 
  Potri.013G079800.1  99 LLRSISRKKP 108
                         *******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.2E-389100IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.22E-3313106IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.6E-5813106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-201740IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.3E-3017106IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-205567IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405680IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.4E-206880IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MIRMDSGNNN TNTVPPFLSK TYDMVDDPST DSVVSWSSSN NSFVVWNVPE FQTDLLPKYF  60
KHSNFSSFVR QLNTYGFRKV DPDRFEFANE GFLRGQKHLL RSISRKKPVH GNLPPQVQSS  120
SVTTCVEVGK SGLEEEVERL KRDKNVLMQE LVRLRQQQQA TDHQLHTVGQ RVQGMEQRQQ  180
QMMSFLAKAM QNPGFLSQLV QQQNESNRRI AGASKKRRLP RQEEENLAGV QCKTSPNGQI  240
IKFHSSMNEA AKAMLHQILK MNSSPRLEPS MNNSGPLLIG NHPSSNGLDS GSSSTRMSGV  300
MLSEVPTASG PSYLPMETGF PASHSTTAIS EVQSPASVAT DYVKTDYTAE MGMHNSGQNT  360
ILPNFTAMTG IVPGGSAGGP NMNIAGSEKG NAEFFDTMSS VLDAPVPIET EALSPSQDEE  420
VFLDGNHKLP GINDVFWEQF LTASPLNGET DEINSSSPES SMSKEQELQS WQDNGWDNIQ  480
HMNRLAEQMG LLTPESLKG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-26710619129Heat shock factor protein 1
5d5v_B2e-26710619129Heat shock factor protein 1
5d5v_D2e-26710619129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00514DAPTransfer from AT5G16820Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G079800.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139770.0KP013977.1 Populus simonii heat shock transcription factor A1d (HsfA1d) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002319787.30.0heat stress transcription factor A-1e isoform X1
RefseqXP_024439744.10.0heat stress transcription factor A-1e isoform X1
SwissprotQ84T611e-160HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2K1Y2T10.0A0A2K1Y2T1_POPTR; Uncharacterized protein
STRINGPOPTR_0013s07730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18433169
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16820.21e-115heat shock factor 3
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]