PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G079700.8
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 148aa    MW: 16844.1 Da    PI: 8.637
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G079700.8genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.51.4e-28121333127
                 NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkk..yatgkrknratksgyWkatgkdke 91 
                         +G rF+P++ee+++++L++k+ g+++ + + i+++diy+++PwdLp  ++++++e yfFs+ + k  y+++ r nr+t++g W+a+g+d +
  Potri.013G079700.8  12 VGDRFSPNNEEIINHFLRHKLLGNDHLV-SKIPQLDIYQFDPWDLP-WINSKDREGYFFSPLHAKnsYTNNGRINRSTNTGSWQAKGRDCK 100
                         688**********************887.77***************.788999******9765551167999******************* PP

                 NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyr 127
                         v+s+ +ge++g+kk++v      ++g   + vmhe++
  Potri.013G079700.8 101 VTSElNGEVIGIKKIFVHSC--IKDG--IKYVMHEFS 133
                         ***9999**********983..3333..579999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.30210147IPR003441NAC domain
PfamPF023652.0E-1512133IPR003441NAC domain
SuperFamilySSF1019412.62E-2912138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MTSKATCLAS DVGDRFSPNN EEIINHFLRH KLLGNDHLVS KIPQLDIYQF DPWDLPWINS  60
KDREGYFFSP LHAKNSYTNN GRINRSTNTG SWQAKGRDCK VTSELNGEVI GIKKIFVHSC  120
IKDGIKYVMH EFSASFNLPN CRDLVRL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A9e-201313218138Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G079700.8
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024439150.11e-105NAC domain-containing protein 71
RefseqXP_024439151.11e-105NAC domain-containing protein 71
RefseqXP_024439152.11e-105NAC domain-containing protein 71
TrEMBLA0A2K1Y2S61e-104A0A2K1Y2S6_POPTR; Uncharacterized protein
STRINGPOPTR_0013s07720.17e-61(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.11e-24NAC domain containing protein 52