PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G059600.1 | ||||||||
Common Name | POPTR_0013s05610g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GATA | ||||||||
Protein Properties | Length: 296aa MW: 32672.6 Da PI: 6.9853 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 53.7 | 2.8e-17 | 227 | 261 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C + Tp+WR gp g+ktLCnaCG++y++ +l Potri.013G059600.1 227 CTHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRL 261 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.596 | 221 | 257 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 5.1E-14 | 221 | 275 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.65E-15 | 222 | 285 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.4E-13 | 225 | 259 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.18E-11 | 226 | 273 | No hit | No description |
Pfam | PF00320 | 5.8E-15 | 227 | 261 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 227 | 252 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MDFCRNVTVS TEYHQQEKVL ASPPPCSKLG AAAAALTATT SPLDDPFSAQ NTEVDFSSEW 60 LSVFVEDCLS STGNYLPAPT VEAQKPNTEE NPPKNWQRKP QDQEDPSSLK KLVIPGKSRS 120 KRRRLPGDKT RNPLTSWCYT NQAFNNLTSS DPPLLQQTYW LADSELIMPI KEDSNNTDMD 180 NEVQEESGVG VHDEDIGKVV AVVGSNGSKD SLGVLESNNG QQQPRRCTHC LAQRTPQWRA 240 GPLGPKTLCN ACGVRYKSGR LLPEYRPAKS PTFVSYLHSN SHKKVMEMRM AGFNT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 120 | 124 | KRRRL |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.9028 | 0.0 | bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G059600.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002319169.3 | 0.0 | GATA transcription factor 2 | ||||
TrEMBL | A0A2K1Y1N9 | 0.0 | A0A2K1Y1N9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s05610.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8487 | 24 | 44 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 6e-36 | GATA transcription factor 12 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G059600.1 |
Entrez Gene | 7489677 |