PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.013G056500.1
Common NamePOPTR_0013s05310g
Organism
Populus trichocarpa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 309aa    MW: 34873.1 Da    PI: 8.1347
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.013G056500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.92e-172774148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg+WT+eEde+l++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Potri.013G056500.1 27 RGPWTPEEDEILANYIKKDGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 74
                        89******************************99************97 PP
2Myb_DNA-binding48.42.2e-1580125148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                         rgr  ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Potri.013G056500.1  80 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
                         678889****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-221876IPR009057Homeodomain-like
PROSITE profilePS5129416.6392274IPR017930Myb domain
SuperFamilySSF466895.5E-2924121IPR009057Homeodomain-like
SMARTSM007171.3E-122676IPR001005SANT/Myb domain
PfamPF002493.6E-152774IPR001005SANT/Myb domain
CDDcd001671.27E-102974No hitNo description
PROSITE profilePS5129424.57875129IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2477130IPR009057Homeodomain-like
SMARTSM007173.4E-1479127IPR001005SANT/Myb domain
PfamPF002496.9E-1481125IPR001005SANT/Myb domain
CDDcd001673.54E-1185125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MRNLSSRNST RSRNTPTPCC SKVGIKRGPW TPEEDEILAN YIKKDGEGRW RTLPKRAGLL  60
RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY  120
WNTHLSKKLI SQGIDPRTHK PLYPNPNSSE IANIAPIQNC ILNSFPLEAN GGVYRATATR  180
ENENFTMTNL DQFPNQVIDD GAKNWPSCDG FNKGLQSHHE QNKEEDYIGN ENEDTFSLFL  240
DSLINENVFA YQQQQQQLQQ PKIIGPSGEP MISSSQAIHH SSISEAEVAY SMAAFGEKDG  300
VLNSHDLA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24271297108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.013G056500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375890.10.0transcription repressor MYB5
TrEMBLB9P8S40.0B9P8S4_POPTR; Uncharacterized protein
STRINGPOPTR_0013s05310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.11e-78myb domain protein 5