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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.013G056400.1 |
Common Name | POPTR_0013s05300g |
Organism |
|
Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
Family |
MYB |
Protein Properties |
Length: 305aa MW: 34269.2 Da PI: 7.1523 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.013G056400.1 | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 52.8 | 9.2e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+WT+eEdell++++k G g+W+t ++ g+ R++k+c++rw +yl
Potri.013G056400.1 27 RGPWTPEEDELLANYIKNDGEGRWRTLPKQAGLLRCGKSCRLRWMNYL 74
89******************************99************97 PP
|
2 | Myb_DNA-binding | 48.4 | 2.2e-15 | 80 | 125 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rgr ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
Potri.013G056400.1 80 RGRIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 125
678889****************.*********.************996 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 305 aa
Download sequence Send
to blast |
MRNLSSRNST RSRSTPTPCC SKVGIKRGPW TPEEDELLAN YIKNDGEGRW RTLPKQAGLL 60 RCGKSCRLRW MNYLRPSVKR GRIAPDEEDL ILRLHRLLGN RWSLIAGRIP GRTDNEIKNY 120 WNTHLSKKLI SQGIDPRTHK PLYPNPNSSE IANIAPTQNS NPNSFPLEEN ARVDRATATR 180 VIENLTITNL DQFPNQVIDD GAKNWPSCDG FNKGLQSHHE QNKEEDYIGN ENEDTFSLFL 240 DSLINENVFA YQQQQQCNII GPSGQPVISS SQAFHHGSIW EAEVTSSMAA FGEKDGALNS 300 DDLA*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Siliques. {ECO:0000269|PubMed:9839469}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |