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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G040700.3 | ||||||||
Common Name | POPTR_0013s03800g | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | bZIP | ||||||||
Protein Properties | Length: 249aa MW: 27260.5 Da PI: 9.788 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 52 | 1.5e-16 | 40 | 95 | 3 | 58 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevak 58 + kr rr+ +NRe+ArrsR RK+a + eLe+ v++L eN++L k l +++++ + Potri.013G040700.3 40 DAKRVRRMLSNRESARRSRSRKQAHLTELETQVAQLRVENSSLLKSLTDISQKYNE 95 68******************************************999999988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.1E-18 | 38 | 102 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.5E-12 | 39 | 93 | No hit | No description |
PROSITE profile | PS50217 | 11.404 | 40 | 95 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.7E-14 | 41 | 93 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.66E-12 | 42 | 92 | No hit | No description |
Pfam | PF12498 | 2.7E-48 | 109 | 235 | IPR020983 | Basic leucine-zipper, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0071215 | Biological Process | cellular response to abscisic acid stimulus | ||||
GO:0071333 | Biological Process | cellular response to glucose stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 249 aa Download sequence Send to blast |
MQRKSAVTVK PTTSVSSREL SEDDENEAET ELTENMQPAD AKRVRRMLSN RESARRSRSR 60 KQAHLTELET QVAQLRVENS SLLKSLTDIS QKYNESAVDN RVLKADVETL RAKVKMAEET 120 VKRFTGLNTM FHALPDISTM SMSSFDGSPS DTADAAVPVK DDPKHHFYKA PNNPITTHDS 180 RPRGNNVLAD ISSVENVQPN PVPAAGVSGN KMGRTPSLQR VASLEHLQKR IRGGASPCGP 240 QSNGEQAK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 54 | 61 | RRSRSRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00040 | PBM | Transfer from AT5G28770 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G040700.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC237587 | 0.0 | AC237587.1 Populus trichocarpa clone POP036-C05, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439529.1 | 0.0 | light-inducible protein CPRF2 isoform X2 | ||||
Swissprot | Q99090 | 3e-80 | CPRF2_PETCR; Light-inducible protein CPRF2 | ||||
TrEMBL | A0A2K1Y0Q8 | 1e-179 | A0A2K1Y0Q8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s03800.1 | 1e-180 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28770.1 | 6e-52 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G040700.3 |
Entrez Gene | 7474606 |
Publications ? help Back to Top | |||
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