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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Potri.013G019200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | C2H2 | ||||||||
Protein Properties | Length: 508aa MW: 54768.3 Da PI: 9.0392 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 76 | 98 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Potri.013G019200.1 76 FVCEICNKGFQRDQNLQLHRRGH 98 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.9 | 0.00016 | 152 | 174 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Potri.013G019200.1 152 WKCDKCSKKYAVQSDWKAHVKTC 174 58*******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.99E-7 | 75 | 98 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-5 | 75 | 98 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.949 | 76 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.017 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF12171 | 8.1E-5 | 76 | 98 | IPR022755 | Zinc finger, double-stranded RNA binding |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 220 | 117 | 147 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 1.2E-4 | 140 | 173 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.99E-7 | 147 | 172 | No hit | No description |
SMART | SM00355 | 90 | 152 | 172 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 508 aa Download sequence Send to blast |
MSNTTGDGTG SFSSGGTGGD EVHLNSSAAA AAANSNGSTI TQQPPLKRKR NLPGNPDPSA 60 EVIALSPNTL MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLKQRTTA EIRKRVYVCP 120 EPSCVHHNPA RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH VKTCGTKEYK 180 CDCGTIFSRR DSFITHRAFC DALAEENTKA NQGLMPNMEP NLQGQVSNLI PSMAINNNPN 240 QSTMMSSFNH LDAKNPLSLP QELMPTPPKP SSGSMFSNGT TGLFGGSRSM SPSLQLNANS 300 STIFEGNGLH NLSGSASMSA TALLQKAAQM GATASSNNVS SPMMQKSFVT SMAPPTFGTM 360 HTQNDQSHVI GGDDGYANQF FSANGGVENS VLNDMGIFSA VLDQNNSLFK TMEHASSNNE 420 NVFQGANSNP GLSSPTSGAN PSGLSRFSTG DVMTVDFLGL GGSRQRNLHQ QHNHQEMEFT 480 RGISHPRMQG LNHFEQATAL KKPMWDV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-33 | 148 | 209 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-33 | 148 | 209 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pth.8362 | 0.0 | bud| leaf |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Potri.013G019200.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146825 | 0.0 | EF146825.1 Populus trichocarpa clone WS01214_I21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024439761.1 | 0.0 | protein indeterminate-domain 2 | ||||
Swissprot | Q9SCQ6 | 1e-119 | IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1 | ||||
TrEMBL | A0A2I4KKG8 | 0.0 | A0A2I4KKG8_POPTR; C2H2 family protein | ||||
STRING | POPTR_0013s01990.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2192 | 30 | 85 |
Representative plant | OGRP95 | 16 | 242 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-108 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Potri.013G019200.1 |
Publications ? help Back to Top | |||
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