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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Potri.013G008600.1 |
| Common Name | POPTR_0013s01000g |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family |
TALE |
| Protein Properties |
Length: 321aa MW: 36167.5 Da PI: 4.942 |
| Description |
TALE family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Potri.013G008600.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 28.3 | 2.9e-09 | 254 | 286 | 23 | 55 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRake 55
+yp++ee+++L++ +gL+++q+ +WF N+R ++
Potri.013G008600.1 254 PYPTEEEKAKLSEITGLDQKQINNWFINQRKRH 286
8*****************************885 PP
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| 2 | ELK | 24.8 | 5.2e-09 | 207 | 227 | 2 | 22 |
ELK 2 LKhqLlrKYsgyLgsLkqEFs 22
LK Ll KYsg+L+sL++EF+
Potri.013G008600.1 207 LKGVLLSKYSGHLSSLRKEFL 227
89999***************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 321 aa
Download sequence Send
to blast |
MEGFYRFNPT ISCSPNDIAR LENLPVVNFT DATTSNNEFH SQVGNLLQAG HGYTPVTESD 60
MHDVIKTQIA NHPRYPDLVS AYVECRKVGA PPEMVSLLED IGRCSYQINT CYEIGADPEL 120
DEFMESYCEV LHRYKEELSK PFDEATTFLS SIESQLSSLC KGTLTKIFDY GSADEPAWTS 180
EEELSCGEVE ASEIPGSLGF HSSDQNLKGV LLSKYSGHLS SLRKEFLKQR KKGKLPKDAK 240
TLLLDWWNHH YRWPYPTEEE KAKLSEITGL DQKQINNWFI NQRKRHWKPS KDMRFALMES 300
VGGDTAGPTC YGIVGDDIGT *
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Highly expressed in the early globular stage embryo before 2 days after pollination (DAP), but not in the endosperm. At 3 and 4 DAP, expression is restricted to the region around or just below the center of the ventral side of the embryo, where the shoot apex subsequently arises. During the transition to the shoot apex differentiation stage, expression is divided between the upper and basal regions of the shoot area, and the notch between the first leaf primordium and epiblast, respectively. When the first leaf primordia is evident, expression is localized to the notches between the shoot apical meristem (SAM) and the first leaf primordium and the putative second leaf primordium. Expressed uniformly in the inflorescence meristem, but after the transition from inflorescence to the floral phase, located specifically in the notches between the floral meristem and glume primordia. At later stages of flower development, uniformly expressed throughout the corpus of the meristem, and in the notches between glume primordia, but less well defined than in the previous stage. {ECO:0000269|PubMed:10488233}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC209045 | 5e-48 | AC209045.1 Populus trichocarpa clone POP061-B03, complete sequence. |
