PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

MYB

Protein Properties

Length: 299aa MW: 33680.2 Da PI: 6.664

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Potri.012G140700.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.6	1.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd+llv++++++G g+W++ ++ g+ R++k+c++rw +yl Potri.012G140700.1 14 KGPWTPEEDQLLVQYIQKHGLGCWRSLPKNAGLLRCGKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	42.6	1.4e-13	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++++ E+ +v+++ +lG++ W+ a+ ++ gRt++++k++w+++l Potri.012G140700.1 67 RGPFSPAEEATIVHLHGMLGNK-WAYMASQLP-GRTDNEIKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.3E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	25.072	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	7.86E-30	12	108	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-15	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.37E-12	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-25	65	116	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-11	66	114	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	17.417	66	116	IPR017930	Myb domain
Pfam	PF00249	8.4E-12	67	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MGRVPCCDKD EVKKGPWTPE EDQLLVQYIQ KHGLGCWRSL PKNAGLLRCG KSCRLRWTNY 60 LRPDIKRGPF SPAEEATIVH LHGMLGNKWA YMASQLPGRT DNEIKNFWNT HLKKRLTSIG 120 PKLQINQSSS SSEPINIKCK SPSARHMVQW ESARVEAEAR LSKQSLLIKP TSTAKSRPDI 180 FLQLWKSEVG ETFRITEEKY GKTCESLVSD TPPSIKNESV FLDDTVSPKP FKTTTFMDTT 240 QEQEDTCKPN EEVMTVSDSI GSNEFADSTD TALKLLLDFP GGNDMEFIGE ESEFFQLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	6e-27	11	116	24	128	MYB TRANSFORMING PROTEIN
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pth.11166	0.0	bud\| leaf

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Potri.012G140700.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147441	0.0	EF147441.1 Populus trichocarpa clone WS01231_B05 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030104.1	0.0	PREDICTED: transcription repressor MYB6-like
TrEMBL	A9PGF1	0.0	A9PGF1_POPTR; Uncharacterized protein
STRING	POPTR_0012s13240.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2331	32	80
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61250.1	1e-93	myb domain protein 17

Link Out ? help Back to Top
Phytozome	Potri.012G140700.1
Entrez Gene	7482088

Publications ? help Back to Top
Ralph SG, et al. Analysis of 4,664 high-quality sequence-finished poplar full-length cDNA clones and their utility for the discovery of genes responding to insect feeding. BMC Genomics, 2008. 9: p. 57 [PMID:18230180]