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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.012G140500.1 |
Common Name | POPTR_0012s13260g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
MYB |
Protein Properties |
Length: 326aa MW: 36868.7 Da PI: 8.3203 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.012G140500.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 49 | 96 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W++eEd++l +v q+G g+W++++ g+ Rt+k+c++rw +yl
Potri.012G140500.1 49 KGLWSPEEDQRLGSYVFQHGHGCWSSVPINAGLQRTGKSCRLRWINYL 96
678*******************************************97 PP
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2 | Myb_DNA-binding | 57.4 | 3.3e-18 | 102 | 147 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
rg+++t+E+e ++ ++++lG++ W+ Ia++++ gRt++++k++w++yl
Potri.012G140500.1 102 RGAFSTDEEETILTLHRMLGNK-WSQIAQHLP-GRTDNEIKNHWHSYL 147
89********************.*********.************997 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 326 aa
Download sequence Send
to blast |
MPKAFIASIT KSKTLFLLYK SPILLIIGVL GEMGCKSSDK PKPKLRHRKG LWSPEEDQRL 60 GSYVFQHGHG CWSSVPINAG LQRTGKSCRL RWINYLRPGL KRGAFSTDEE ETILTLHRML 120 GNKWSQIAQH LPGRTDNEIK NHWHSYLKKK LFKAEGMESP NKTQSASSNS DNMDLSPSPK 180 RLKMQSPESS MNMEKPSTDI DRPVLPRMFD YLKEPNRSSL LPKVMFAEWL SLDSFASSGE 240 PVVSKSTFDH NPSFQDTSFM HHYLLEEGAF GGDYQNSLSD GSSGDIFSSE FKFESQSPGN 300 EFDFSSGEDL CREFNFRNIG DVMYI*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HQ902040 | 1e-85 | HQ902040.2 Populus balsamifera MYB transcription factor (MYB19) gene, partial cds. |
GenBank | HQ902041 | 1e-85 | HQ902041.2 Populus deltoides MYB transcription factor (MYB19) gene, partial cds. |
GenBank | JQ929722 | 1e-85 | JQ929722.1 Populus trichocarpa MYB transcription factor (MYB19) gene, partial cds. |